Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2405 ATGCAGTTTGCTCCGACACGCACGTGTGCCTCCGCGATCTCCACCGTGGTCATCGACTCTATCGTTGCTCTGCCGTGTTCTTCTGCTCTTTCGAATTCGAACATGTCGAAGGACAAACACTCTACCAATTTGTCGTGCACCTTCAATTCAACTACTCAATTTTTGTCAATAGGAATTCCATTTATTTTCAATACATGGATTGTAATGCATCTTACACAAGAGGACTATGCGATGTCTTATAGGAAGTTCGATCACCCAAGACACAGTTCTCTTGGCTTTCTTCCAAGGATGCCAGCTTCTCGTCATCATGGAAAAGGTTATCTAGGATCCTTGTCAAAAGCTGGACAGTTTCCTCCTATTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCTGTGCCAACACCCTTGGCTGGTTGGATGTCAAATTGTTGCCCCCAACATCCACCGACACCAGCATGA 462 0.4632 MQFAPTRTCASAISTVVIDSIVALPCSSALSNSNMSKDKHSTNLSCTFNSTTQFLSIGIPFIFNTWIVMHLTQEDYAMSYRKFDHPRHSSLGFLPRMPASRHHGKGYLGSLSKAGQFPPIGAHGPFQPTPAPVPTPLAGWMSNCCPQHPPTPA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2405 153 PANTHER TOPLESS-LIKE PROTEIN 98 147 - -
Amo01g2405 153 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 98 147 IPR027728 GO:0006355
Amo01g2405 153 Gene3D Ribosomal protein L3, domain 3 78 125 IPR044892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2405 Amo-Chr1 80719893 80723273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2405 78 105 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 78.571 4.40e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2405 - K06316 gmx:100817452 68.5514