Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2336 ATGCCAGATTTTAAACCCTGCATCACATGCTTGTTCTTGATCGTGTCCTCGCTATTATTATTATCCCCAAATGTGGCTTCTTCCTCCGATGAGAATAACTCGGCAGATGAAGTCTTTATCCAGTGTGGGACCGACGAATACGCAGACTTGGGCCCCACCAAGTTCACCCGTACGTTCATGGCTCTTATGGACACGGTTTCAGTTAAGATCAAAGAGCAAGGCTGGAGCGCTGAATCGATTATCAACCCAGTTGCCCCGATTTTCGCACTAGCGGAATGCCGCAACGACCTCAACAATAGCAATTGCTACAAATGCTTCAACCACGCCAGGGAATATTTGTCGCAGTGCTTGCCAAAGGTAGCGGGGAGAGTTTACATGGACGGTTGCTTCCTTCGCTACGATAACTATGGTTTCTTCAACGAGGTATTAGACAAGAAGTACGACCATAGTGTTTGCATAAAGTCTTCCTGGATGGAGAAGATGGAGTATAATAGCACCGATAGTAATAATAGCAATGCAACGGACCCCGCTGGGTTCAGGGAAAAGGTTGGGAAGGCTGTAACGAACGTGACGGAGACGGCAGCCACGTCTGTTCATAAATTCGCAGTGAATGGGGATAACAAGGACGTGTTTGCGCTGGCGCAGTGTTGGCACACCTTGGACAGAGAAGGGTGTGAGAGGTGCTTGAAAAGAGCAGAGAGGAAATTGAGTGAGTGCATTATTGTTAATGATGAAGGTAAGAGCATGCTTGCCGGTTGTTTCTTGAAGTATTCCACTCGCAAATTCTACGGTGAAGAATTCGATGAGAACGGAGTCAAGAACAACTACGACAATTCTTATAACAAGGTGATCATTGTATCTCTATCATCAGCGGTTGCTGTGACTTTGATTATTATCACAGGTGTGATGGTTAAGAAAAAGAAAGCACCGATTTGTACAGTAGGAATGGACCGTAGCAAGAGGTTTGAGTACGTGGCTGGATACACTTTTAAATATGAGTTGCTTGAAAAGGCGACCAATTATTTTGATCCTGCATGCAAACTAGGGCAGGGTGGAGCTGGTTCTGTGTTCAAAGGAACGCTACCTCAAGGAAAGACTGTGGCCGTGAAACGACTGTTTTTCACGACGCGACAGTGGACGGATGGGTTCTTCAATGAGGTTAATTCAATAACAGGGATTACCCACAAGAATGTGGTGAAACTTTTAGGGTGCAGTATTGAAGGCCCGGAAAGCCTCTTGGTTTATGAATTTGTGCCAAATGGGAGTCTTGAGCAAATACTTTTTGGTAAAGACTCAACAACTTTTTTGACCTGGAAGCAACGTTTTAATATCATATGTGGTGTAGCTGAGGCCCTAGCATACCTTCATGGAGGTACTGAATCAAAGATTATTCACAGAGACATTAAGTCCGGGAACATTCTGCTTGATGAGAATCTTGATCCGAAAATTGCTGATTTTGGTCTTGCTCGCTTTGTTACGGAAAATAGAAGTCATGTTACCACAGGAATTGCTGGAACATTGGGATATATGGCTCCTGAATATCTTCTTCAAGGACAACTAACAGAAAAAGCAGATGTCTATGCCTTTGGTGTGGTTGTTGCTGAAGTTGTATGTGGCAAGAAAAACAGTGTTTATACCCAGGGCTCAACTTCAGTACTCCATTGTATTTGGAAGAATTACAAGGCACAGAACATCACGGCATCAGTTGATCCTGCACTGAATGGTCAATTTGTAGAAGAAGAGGCATCAAATGCCCTCAAAGCTGCCCTTCTTTGCACACAGTCCTCTGTTTCTCTTAGACCATCCATGTCTCAAGTGCTTCAGATCCTAACCGATAAAGACTTTGTTGTTCCCTCCCCAAGGCAACGGCCATTCCTAAATTGCACTATGCTGAGCCTAGATGACCGAACACAAGCTACCTCCACCTTCACCCTGACTCCTGAAACTTCACCAAATGGCCCCGCCACCACTAGTGCAAGATCCTCTTTCCATACCACCACAGATTCATTTAGTTCAAATACACATGCAATTAATATTGCATTATCTGAAATTCTTCCTATAACGAGGCATGAGTAG 2076 0.4436 MPDFKPCITCLFLIVSSLLLLSPNVASSSDENNSADEVFIQCGTDEYADLGPTKFTRTFMALMDTVSVKIKEQGWSAESIINPVAPIFALAECRNDLNNSNCYKCFNHAREYLSQCLPKVAGRVYMDGCFLRYDNYGFFNEVLDKKYDHSVCIKSSWMEKMEYNSTDSNNSNATDPAGFREKVGKAVTNVTETAATSVHKFAVNGDNKDVFALAQCWHTLDREGCERCLKRAERKLSECIIVNDEGKSMLAGCFLKYSTRKFYGEEFDENGVKNNYDNSYNKVIIVSLSSAVAVTLIIITGVMVKKKKAPICTVGMDRSKRFEYVAGYTFKYELLEKATNYFDPACKLGQGGAGSVFKGTLPQGKTVAVKRLFFTTRQWTDGFFNEVNSITGITHKNVVKLLGCSIEGPESLLVYEFVPNGSLEQILFGKDSTTFLTWKQRFNIICGVAEALAYLHGGTESKIIHRDIKSGNILLDENLDPKIADFGLARFVTENRSHVTTGIAGTLGYMAPEYLLQGQLTEKADVYAFGVVVAEVVCGKKNSVYTQGSTSVLHCIWKNYKAQNITASVDPALNGQFVEEEASNALKAALLCTQSSVSLRPSMSQVLQILTDKDFVVPSPRQRPFLNCTMLSLDDRTQATSTFTLTPETSPNGPATTSARSSFHTTTDSFSSNTHAINIALSEILPITRHE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2336 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Amo01g2336 691 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 676 - -
Amo01g2336 691 SUPERFAMILY Protein kinase-like (PK-like) 328 639 IPR011009 -
Amo01g2336 691 ProSiteProfiles Protein kinase domain profile. 342 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2336 691 Pfam Protein kinase domain 347 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2336 691 Gene3D - 34 138 IPR038408 -
Amo01g2336 691 Gene3D - 160 262 IPR038408 -
Amo01g2336 691 Gene3D Phosphorylase Kinase; domain 1 307 417 - -
Amo01g2336 691 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Amo01g2336 691 SMART serkin_6 342 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2336 691 ProSiteProfiles Gnk2-homologous domain profile. 161 262 IPR002902 -
Amo01g2336 691 CDD STKc_IRAK 348 611 - -
Amo01g2336 691 Gene3D Transferase(Phosphotransferase) domain 1 418 617 - -
Amo01g2336 691 MobiDBLite consensus disorder prediction 643 667 - -
Amo01g2336 691 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 676 - -
Amo01g2336 691 Pfam Salt stress response/antifungal 171 259 IPR002902 -
Amo01g2336 691 Pfam Salt stress response/antifungal 52 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2336 Amo-Chr1 78429555 78432501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2336 1 641 Receptor kinase-like Gene Family AT1G70520 37.348 1.27e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo01g2336 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2336 - - ahf:112722338 1313.13