LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g2334	ATGGCAGATGAAGATCACACCCCAACTGAAGCAAAAGTTTACTATTCCAAATCAATATGGTGGTCAAAAACTCCCAAGAGAAGTGACAGTAACAATAATGGAGTTAATGGCTTCTGTTTTGGTGATGTTAAAGATTACTATGGCTATAACTCCCAAGAAATAGTGACTCCTGAAATATCTGAGTCATTTGAAGGGATCAGAGTTTTGAACAACAATGGTAGATATGGAGCTAACAATAATGAAATCTTCATGGCAGCCGCGGCCTGTGGTGACGAAGAGAATGGCGAGTACGACCGTTATTCGATGGTATCGTTGTCGGCAGAAATTGTGGAGATAGTTGAAGATGGTAAGAGCATAACAAACAACAAGAATAGAGGAGATGATGATCTTCATGTTGCTGTTGGCAAAGATGACTTGGATTTGGTGCAGTGGGTTCTTGATCATGTTGTTTCTCCTGGTGCTCGGATTTTTCTTGTCCATGTATCGCCACCAATCACAATGATTCCCACGCCTGTTGGAAAGTTTGATAGAAGCCAATTGACCCCACAACAAGTGAGATTTTACGTGAATCAAGTGAACAACAAGAGGAAGGAACTTTTGCAGAAGTATGTCCAGCTCATCAATGAAGCCAAGATAACTGCTGAAACGTTGCTTCTTGAGAGCAATGACACAGGAAAAGCCATTTTAGATCTCATCTCTATACTTAACATATCCAACATTATCATAGGAATGAAAAAGCTACCCTACACAAGGAAAAGGCGCAGCAACAAATTGAGTAGAGGAGAATTTGTAAAGAAAAATGCACCAGTATCCTGTGAAGTTACCTTGGTTTGTCATGGTGAGGAGTTTGTAGCTACCCCATACATGGATCGATTTGCATCCAAAGGCCAAGTTCCAGTGCCAATGGCAGTATCACAAAGTAAAGGAAGGATGCCATCTAAAAAATTCACAATGTACCATTCTTCTGATTTTGAAATCAGGTCGTTACATGCTTTGGTCATGAGGAATTACAAAGAACTTTCAGATGATTTAGATATACAGTGTTTTTGGGGGTATTAG	1059	0.4004	MADEDHTPTEAKVYYSKSIWWSKTPKRSDSNNNGVNGFCFGDVKDYYGYNSQEIVTPEISESFEGIRVLNNNGRYGANNNEIFMAAAACGDEENGEYDRYSMVSLSAEIVEIVEDGKSITNNKNRGDDDLHVAVGKDDLDLVQWVLDHVVSPGARIFLVHVSPPITMIPTPVGKFDRSQLTPQQVRFYVNQVNNKRKELLQKYVQLINEAKITAETLLLESNDTGKAILDLISILNISNIIIGMKKLPYTRKRRSNKLSRGEFVKKNAPVSCEVTLVCHGEEFVATPYMDRFASKGQVPVPMAVSQSKGRMPSKKFTMYHSSDFEIRSLHALVMRNYKELSDDLDIQCFWGY*	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g2334	352	Coils	Coil	189	209	-	-
	Amo01g2334	352	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	90	299	-	-
	Amo01g2334	352	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	90	299	-	-
	Amo01g2334	352	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	138	249	-	-
	Amo01g2334	352	Gene3D	HUPs	131	252	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g2334	Amo-Chr1	78122755	78129227	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g2334	129	280	U-box Gene Family	AT2G45910	28.758	7.26e-14	70.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g2334	-		-	pvu:PHAVU_003G204300g	354.755