Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2287 ATGGGGATAGAAGAAGAGAGTGGGGCGTCGCTGCCCGGCGGGCAGGACGGGAAGAAAAGAAGAGTTACGTACTTCTACGAACCCAGCATCGGAGACTACTACTACGGTCAGGGTCACCCAATGAAGCCACACCGAATCCGGATGGCTCACAACCTCATCGTTCACTACTCCCTCCACCGCCGCATGGAGATCAATCGCCCTTTCCCCGCCGCCCCCGACGATATCAGGCGTTTTCACTCCGATGACTACGTCGACTTCCTCGCCTCCGTCTCCCCCGACACCCTCGCTGACCCTGCCTTCTCCCGCCACCTCAAGCGCTTCAACGTCGGGGAGGACTGTCCTGTTTTCGATGGATTGTTCCCCTTCTGCCAGGCCTCCGCCGGCGGCTCTATCGGCGCCGCCGTCAAGCTCAACCGCCAGGACGCTGATATCGCTGTCAATTGGGCTGGTGGCCTCCACCATGCTAAGAAGTCCGAAGCCTCTGGATTCTGTTACGTCAACGACATTGTCCTCGGTATTCTCGAGCTTCTCAAATATCACAGGCGTGTATTGTATGTTGATATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTATACAACTGATAGGGTAATGACGGTGTCTTTTCACAAATTTGGGGACTTTTTCCCCGGGACTGGACACATTAAAGACGTTGGTGTTGGCTCAGGAAAGAATTATGCTATCAATGTCCCGTTAAATGATGGAATGGATGATGAGAGTTTCCGGGCTCTGTTTCGACCTATCATTCAAAAAGTCATGGAAGTTTATCAACCTGATGCCGTCGTTCTTCAATGTGGAGCTGATTCTTTGTCTGGCGACAGGTTGGGTTGCTTCAATTTGTCTGTGAAAGGTCATGCAGATTGCCTTCGCTTCCTTAGATCTTTCAATGTTCCTCTGATGGTGTTGGGTGGTGGAGGATATACAATTCGGAACGTCGCTCGTTGTTGGTGTTATGAGACAGCAGTCGCAGTAGGAGTGGAGCCTGATAATAAGTTACCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTTCATGTGGATCCAAGCAACATGGAGAATCTAAACACGACCAAGGATATGGAAAAAATAAGGAACACACTACTAGAACAGATTTCCAGGCTTCCACATGCTCCCAGTGTTCCTTTTCAGACAACACCATCAACCATACCAGTTCCAGATGTGGCAGAAGAGGACATGGAGAGAAGACCAAAACCTCGCATATGGAGTGGTGATGATTATGATTCTGATCATGATGAAGATGAAAAGGCTAATATGAAGTCCTCAAACTTAAATGACTATATGAGCAGGGATGTTGCAGATGATATGGAAGAGGAGAAACCGGTGCCTCCCCCACATGGATGCTGCTGA 1404 0.4907 MGIEEESGASLPGGQDGKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPAAPDDIRRFHSDDYVDFLASVSPDTLADPAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRQDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGSGKNYAINVPLNDGMDDESFRALFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSNMENLNTTKDMEKIRNTLLEQISRLPHAPSVPFQTTPSTIPVPDVAEEDMERRPKPRIWSGDDYDSDHDEDEKANMKSSNLNDYMSRDVADDMEEEKPVPPPHGCC* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2287 467 PANTHER HISTONE DEACETYLASE 5 458 - -
Amo01g2287 467 Gene3D Histone deacetylase domain 18 393 IPR037138 -
Amo01g2287 467 SUPERFAMILY Arginase/deacetylase 20 385 IPR023696 -
Amo01g2287 467 PIRSF HDAC_I_euk 5 460 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 MobiDBLite consensus disorder prediction 406 438 - -
Amo01g2287 467 MobiDBLite consensus disorder prediction 389 467 - -
Amo01g2287 467 CDD HDAC_classI 25 332 - -
Amo01g2287 467 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 228 241 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase signature 245 263 IPR003084 GO:0004407|GO:0016575
Amo01g2287 467 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Amo01g2287 467 PRINTS Histone deacetylase superfamily signature 182 197 IPR000286 -
Amo01g2287 467 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Amo01g2287 467 Pfam Histone deacetylase domain 39 330 IPR023801 -
Amo01g2287 467 PANTHER HISTONE DEACETYLASE 5 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2287 Amo-Chr1 73854908 73859385 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2287 K06067 - gmx:100807923 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2287 01 73854908 73859385 Amo11g2074 11 113376641 113378582 hybridization