Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2285 ATGGAGTTTGATCAAAATTTCTTTGAGGATTTTACTTATCTTTCTGAGAGTATTTATGAAAATCCATGCATAAAGAAAGAGATATCCACCACGGTTCCCATGCAACAAAAATCTCTCCTTGTATGTCCTCCATTGAAAAATGAAATTTTATACAAGAACGATTTCCACCATCTTCAATCCCTAAAAGACATTACAAACACCTTCTACTCCATGGAAATTGCACCAAACAAGAACCAAATGGAGGATATTCATGCTTTCCCAAACAACTACAATAGCTTATGGGATTTATCTCAGAAAAACCAAGTTCAAATTGATGATGCTCTCACACCATCACTAATTTATGATGCATCTCTATTGGTGCCAATGAATTTAAATTTCCAAGATGAGCTTTCAACCTTAACTCCAACAGAAAATGCTTACTGGAACAATAATCAAAATCCTTTTCACAACAACCAAATACCCCAAAGAAGGGGACTAAGGAGGAAAGACAACATTCAACAAAGTGTTACCGAAATAATCAAAGGCCAGTGGAGTGCAGATGAAGATAGATTACTAACAGATCTAGTTGAACTCTTTGGGTTTAAAAATTGGTCCTACATAGCAACACTAGTCAGCGGTAGGATAGGGAAGCAATGTAGAGAGAGATGGTTCAATCATCTTCGGCCGGATATTAAGAAGGACTCCTGGGATGAAGAAGAGGATAAACTACTAATTGAAGCTCACAAGCAAGTTGGAAACAAGTGGGCTGAAATTGCAAGGAGGCTCCCCGGCCGCACTGAGAACACAATTAAGAACCACTGGAACGCCGCTAAGCGAAAGAAGAGTAGCAAGAGACAACCTAGGAAGAAGAAGAACCAGACTTATTACTTTGGGGAAACATTGCTTCAGCGCTACGTCAAAGAGGTCACTGCAGCTGATGCGGCAAAGAAGCAGCTGAAGAAATCCATGAAAAAGTTGAGAATAACGAATGAGGATTACAACCTGCAGCAGAATGCATGCATCACTGGGTATGATGGCAATATACCAGTGAAGTTCAGTTCTAATGAAATTGGGAATGGTTCTGTTCTGATTGATGGCACAGAGAACTATGTTCCAATGCAGCTTGATATGATTGGAATTGAGACCTACATGAACTAG 1137 0.3949 MEFDQNFFEDFTYLSESIYENPCIKKEISTTVPMQQKSLLVCPPLKNEILYKNDFHHLQSLKDITNTFYSMEIAPNKNQMEDIHAFPNNYNSLWDLSQKNQVQIDDALTPSLIYDASLLVPMNLNFQDELSTLTPTENAYWNNNQNPFHNNQIPQRRGLRRKDNIQQSVTEIIKGQWSADEDRLLTDLVELFGFKNWSYIATLVSGRIGKQCRERWFNHLRPDIKKDSWDEEEDKLLIEAHKQVGNKWAEIARRLPGRTENTIKNHWNAAKRKKSSKRQPRKKKNQTYYFGETLLQRYVKEVTAADAAKKQLKKSMKKLRITNEDYNLQQNACITGYDGNIPVKFSSNEIGNGSVLIDGTENYVPMQLDMIGIETYMN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2285 378 SUPERFAMILY Homeodomain-like 172 267 IPR009057 -
Amo01g2285 378 Coils Coil 305 329 - -
Amo01g2285 378 SMART sant 225 273 IPR001005 -
Amo01g2285 378 SMART sant 173 222 IPR001005 -
Amo01g2285 378 PANTHER BNAA02G29060D PROTEIN 143 306 - -
Amo01g2285 378 Gene3D - 228 290 - -
Amo01g2285 378 PANTHER MYB PROTEIN-RELATED 143 306 - -
Amo01g2285 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 220 IPR017930 -
Amo01g2285 378 ProSiteProfiles Myb-like domain profile. 221 271 IPR001005 -
Amo01g2285 378 ProSiteProfiles Myb-like domain profile. 169 220 IPR001005 -
Amo01g2285 378 CDD SANT 228 268 IPR001005 -
Amo01g2285 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 275 IPR017930 -
Amo01g2285 378 Pfam Myb-like DNA-binding domain 226 268 IPR001005 -
Amo01g2285 378 Pfam Myb-like DNA-binding domain 174 220 IPR001005 -
Amo01g2285 378 CDD SANT 177 220 IPR001005 -
Amo01g2285 378 Gene3D - 173 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2285 Amo-Chr1 73550227 73558644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2285 56 302 MYB Transcription Factor Family AT4G18770 42.000 1.16e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g2285 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2285 K09422 - adu:107469217 275.404