Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2283 ATGGACCAACACCACTCCCACTACGTCCACCACCACCACCACAGCCACCATGATCACAACAACGACGACAACAACACCAACCACACTAGGTACGCCCCTCCCCCTCCTCATCACAACCACAGCCACCTCCCTCCGCCGCCCCCTCCGCCCCCGTCCCTCCCCACTCCGCCAGCCCCTCCTCCCCAAGCACAACCCCTCCGCTATCGCACCATCCGCACACCTCCTCCTCCGCCTCCTTATGCCCCCAATAACAACCACCCGCCATCCCATCAAAACCAATTCCCCCAATTCAATTCCCCTAACTACCCTAATCGTCCCTTCCAAGAAGAACACCCAATCTCCAACAACCACAATCAGCCATTTTCCCAATCCCCCAGGATTGCCAGCCGAATCCTCCCGGGCGATCCTTTCCCCCGCCGCAATTTTCCTCGTTTCGACACTGAAACACGCTGGGACCCTAACCCTGGCCGTAGGATCGCTCCCGACTGTCTCCTTCCGAGGAATTATACCCCCGTTGATCTTGACAGTGAATTGCGCCAACACCGTGAAGGGGTCTCGCTGCCGCCCTCGGCATATCCGGCCGAAAAGATTCGATACGATCCCGATCGCTCCAGGTTGAGACTTGAGTATGAGTATGAGGGTAACCCTAGGAAGGATGAGGAGTTTGGTTGCGGCAGCGGTAATGATGCTAATTACCACAATTACCACCGCCGCGGCGTTGGGGATTTGCCACCCAGACACGACTTGCCCAACGGAGGCTTCGGCAGGGCGCCACCGGCGATGTCAAGGGAGATTAATATTGATTTGAAACCCGGGGGGTATGTTCGCGGGTATAGTGTGGAATTCGAGGATAAGATTCCCAGGGTTGGAAGAAGAGATGGGCATGGCGAAGGCAAGAGGTGGTTGAATGAGAGGAGGGGACCTAAGGAGTTGCCTGATTCACGGTTCGAATTGGGGACCGGCGAGATTGGTTTTGCTAAGAATGTTGATGATGATTTTCGCGTTGGGACGCGTGAGGAATATGGATGGGAATCGGGTAGATATAGTGGCAGAGGGAACAACAGGGAGTTTGGTCATGAATTATGGCGACCTTCTCTAAAGAAACAGGTTCAAAAGAAGAGTGCTCTTCTTAGGATCCAGAATGCAAAACCAAGTTATAGGAATCGTGAGATTGAACAATTACGGAATGCTGGTTATTCTGCTGAGTCTAACACTAATGATTTCAGGGGCAAGGAGCAGTGTGGGCATGTAGGTCATGGGATGAAACAAGAAGAAAGGGAAGGAAGTCCTGTGGAGCTTGATATCTCTTTTGAATCAAATTCCCTGGTTGCGAAGGCTATTGTGACCGCTTCGACTTCGACTGTTGTTAATGATACAAATATGAATTCTGTCTCTGATGCTGATTTAACTCCCTCAGAAAAGAGAAAAAAGGTTTCAGTATCCGATAGTGATTGTTCTGGTTTGGAAGCTGCAAAAGTATCTAGGGATGTTGTAACTTTGAATAGCTCATCATGCAAAGTGAATGACTGCTCTGGATCTGTGAATGATTTAAGCTTACAGAATAATGTTGTTAATCCTTGTTCTCAACCTTGCACCCGTGAGACTGATAGTGTGAAAAATGAGGTTGCAGGTGGAAGTACCAAAATTCACTCTGGTAAGTCCTCCCCAAGGGTTGTCAAGAAGAAAAAAGTTGTCAAGAGAGTAGTGAAGAAAGTTGTTGGAAATCCAAAATCTACAATGTCAAATTCACGATCAGTGAATAAGGTTCATGGATGTGTGCAACCTGATCGAGTCATACCTAGTTCTTCATCTGTCTCTGTTCCCAACAAAGTTGAACCTTGTCTGGAGCAGAAAAACATCACTGTAGACAAGATGTCAATGCCTGGCCATAGTTCATACAATTTATCAAAGGATCGGAATCAATTGCTTGAAGATAGAAATGGAGATCTAACCCTGCTGAGTTTGGGGCCACATTCCAGGTCACGAGAATGTGAAACTGATGAAGATTCAGATACTCAGAAAGGAGCCGCCAGGTTTGAAAGTGGCCTTAACATTCCAAATTCTCAATCTTGTGCTTCTACTGGTGAAGCTAAAAAGATTGATTCTGAGTGTTTAGATGCAAATAATTCTGTCCATGACTTGCGTAGAATGCCAGATACTAACATGGTTCCTGAATTATTAAATGGAAGTACTTCCAAAATCAATGATGTGGGTTGTGATATTAAACAGCTATGTCAGAATCAAGAGTCTCAATCATGTGAGAATTATTCAAATGTAAGATGTCCACAGAATGGGTTTGTTATAGATGTAGTAGATGACAGCGTTCTTAGTTCAGCTGACAATATTGGTAACTCAGATCGCACTAATACATATAACTCTGCTAGTAGCGTTTATGGCCTAATTTCTGGTGATCTTAAAGGATCTAAAGAGAAGCTTACAGTTACTGAATGTGGTCTTACTGGTGAATCTGGTTTTGGACTTATGGTCCCTACTATTATCACCAAGTATGCTATTTTGGAAGAAAATCCAGACGTGATCAACCCTGCATCAAGCAGCGCAATGTCTGCCCCTTCAAATTCAGGAAAAATTAAGATTCACTCTGGTACAGATTGCATACAAAATGCTATTGCTCTGACACAGGGTTCTTATAGTGGACCGGTCAATTTAGATGATGGTACCTCTGTTCAGTGTTCTGACATCACTAATGATGCTGTGAAGGATGTTTCCCCCTGTTACGCTGCCATATCTTCTGAGAATTGTTGCACGGAAGAGCCATTTTCAAGTTCTAATCTTTCTGTTGGATTTGGTGAAGGGGATACAAACAATATGAAAAAGAGAAAAGCTAGGACTCATTCAAAGTTTTTGCACTCAAAGATGGAGGGAATTTCTCCAAAACCTGTAAATTCAGTTAGCCATGCAAATGATTGGGATACTGCCTCAAGTGTGAAGGTGAAGGATGCATGTTGTTCAGAAGTTTTGGATCAATCTGTTCAAAGCTTAGATTCTAACCTGGAATCGTGCTTGAATGGGATCATTACTTTACATGGGAAAAAGGAGCTTTCAGAGGCTGAGCTTTGTGTTAGAGATAATGAGATTGATGATGCAAATTATCTTTCACTATTATCTAAAGGGATCAAAGTCACGACTACCTCTGAGTTGAGTGATGCAGTTGTGGTATCCAAATCTTGTGCGGATTTTCCTGTTTCTTTCAGTGATAAACAAGCGCCCGAAAAAGAAGTTGAATTGTCAAGCATGGATGTTCTGTTTAGTGCACAATCATTGTCATGTTCAGAGGATAGTAGGAAATTGTCTGACAATTTTGTTGGAGGTTCTTGTGACGCTAGATATGCAAATAATGAAACCATGAGTTCTGACCATTTTGAATTAAAGAACTCAGATTTTGCATCTTATTCACTTCGTGAGGACTTGGACATTCAGTTCCCATTGTTGGATGGTGAATGCAAAGAAAATGGCACTCAAATGCAAACTGACATTTTTACGTCTGGATTTAATAAGGGAGATATGAAGGACAGTTTAATTCATCAACAGAGCATTGTGTCCCATCCTTCCGATGGTGATTTGGAGGAGGATGCACCTGAAGCACCATCAGATGTGTGTTCTCAAGGGATATCGGAAGCACCTGAGAGAGGGAATTTAAATTGTACATCAATCCAAGATGAAAACAATTGTGGGGATATATCTGCAGTTGAACATGGTTCTGATTTGCCTACTTGTACTTCACCAATACAGCATACTAATAAGATTATGAAGTCAGCTAATGCAACTGGGCATAGTAACCCAGTTGAGAGGAATCTAATGCGACAATCATCCCAAGTCAACTCCAAGGTTTCAAATAATGGTCCAGTTTCTTATTTTTCAGAAAATGGGAGCAAAAATACCCTTGGAGGTGCCATGCCAAAAACTCAAAAGGGTCGTTCGTTCATCATTTCAAAGTCAAATTCAAAGACATCTGCCTCTTCAACCCATCTCTCAAATCCTCGAACTTGGCGACGTTCTGGTAATAATTCTCAAGGTTCTTTACCTGGAAACAAGCTTTCGCCAGGAAAATTTCTTCCCAAAAGGCAAATTCTAGATAGGAAAGGAAACTTTCAGAATACCTCTTACATTCGTAAAGGTAACAGTCTTGTAAGACAGCCTACTACAGTTTCTTTTACTCAGATCTCTTCTGTAAATAAGTCACCTTTGAGCTTAGATGAATTATCAAAGAGTACCAGATCTGGGAGCAGGATTGATGTGTCAGATCAACTGACCTTGAAAACAGGAGTAGCAGAGGTCCCTCAGCAGAGTCAGAGAAAACCTTCACTATCCATTGGCACATTATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGTTGCTATGAAAATGCATCAGATCCTAGAAAACTGATAGATATCAATGATACACCAAACTCTTCCAAAGATGATTCAAATCAGTATGAAACTCCTGATAATCAAAGTAGTCCACTGAGTAAGCTGGAGAACCAAGTTGAAGCAAATGATGGACACATTTCTTCTTTCAGCACCAGGAGAATTGTATATACAAAGCCCAAAACAAATCAGTTGGTAGCGACTTCAAATTCTCGTGATGAGAAGTCCCAAACAGCCTTCTCTGAAGGCTACTACAAGAGGTGCAAAAATCAGTTAGTTAGGAATATGAACCAGACTGTTGCAGTGCCGAAAGCCACTCTAGATTCTGATGGTCAGGGGTCTTGTAAGGTGCTTTGCAACAGAAAGCTTAGTAAGAGGCAGTTACATAAAGTTGCTGGGAGGTCATTCAAATCTTTAAGAGCCTCATTAGTCTGGACATTATGTGGCAAAAAGTCACCTAAAAATGGCCATAATTCATGGCATTCTCAAAGGGTTTTGCCTCAGTTATTTCCATGGAAAAGACCAACATATTTAAGAAGCGTCATTCATAATTCTGCTTCATGTTCCAATAGTACCTTCTTATCAGCAGTTAGAAAGATGGATACTGTTTACACTAGGTCAACCCGTGGGTTTTCTCTTTGGAAATCCAAGGTATTAAGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAGGCCACACTTGCTGTTGCTGCAGTAGAGAGGAAAAAGAGAGAGCAAAAAGGTGCAGCTTGCGTTGGTTCCCATGCAAATAAACGTATATTCCGTATTGGTTCAGTTCGCTACAAAATGGATCCTTCCAGGCGCACACTTCAGAGGATTTCAGATGATGAATCCCTGTTGTCTGCCACTACTGATTCGGGCTTGGTTGTGAAAAGAGCTTACATTCCTAGGAGATTGGTGATTGGAAATGATGAATATGTCCGAATTGGAAATGGTAATCAGCTTATCAGAGACCCAAAAAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCATACTGCCAGGCAACGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGAGGGTGGGAAATGCCCTTATGTTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATACCAGAGAGAATGCCAGATTGTTCTTATTTTCTGCAAGGCTTATGCACAAACCGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCTTCTGTTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTAGGAAGAAGCACAGCTATATCTGTCCTACTTTTGAAGCAACGGGCACCTGTACGAAAGGAACCAGATGCAAGCTTCATCATCCCGAAAAACAAAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAGTAATAGTAACAGCAGAGGGCGTTACTTTGCTTCTGTTCCGATTGATGTTTCTGAAGCTGGAATCGTAGTTATTCCAGGGCAACGTGATCAGAGTGATGATCTTGAAGGAGAACTTACTGACTACATCAGCCTTCAGGATGACTATACAAAAACTGTTGGTCAATCATTAGCGCTAACATTGTGCGACAGCGATTCCTTGAACTTGCAGTTGGAAGATTATGAAGTAAATATCAAACCAACTCTTTTAATGAAAACAAAAGGCACGCCGCGATCTTCTTGGTCCAGTGTCCTGCAAATAACCTCTGGAGAACAGACAAATAAAATTTACTCTACCGGGAGTATTTATGCAATTCCTGTGCTCCCCCCAAAGACTATTACCGCCCTTTTGACATCATTGATACACATCGATTGTCTGTCTTGGAATTGGAATATAGGGCGACGTTACACGGGTGCTCAATCAAATGATATTGAGCATGTTTTCCATTTCTTTTTGAGAAACAAGCGGGCTATTTTTTTTGCAAAATGGTGCTCAATTTCACGTGGCAACTCTGCCAAGATCTCTTCGTTAGTATGGAATGTATCATCAAATAGTCAATATGATTTCACGAGATCTAGTTTCATTCAAACGGATTTTAGCCAATTGAAAGGATCTTTTGATCAATCCAGAAATTTCATTAGAAACGAGGGTTTGGAATATCATACATTGACCAATCAAAGAGATACAACTAAAAGAAAGATTGATTCTTTGTTTGGATTCTTCCTTTCTTCAAACGGAACGAACATAAATAGAATCAAAGCGATTCTCTAA 6729 0.4232 MDQHHSHYVHHHHHSHHDHNNDDNNTNHTRYAPPPPHHNHSHLPPPPPPPPSLPTPPAPPPQAQPLRYRTIRTPPPPPPYAPNNNHPPSHQNQFPQFNSPNYPNRPFQEEHPISNNHNQPFSQSPRIASRILPGDPFPRRNFPRFDTETRWDPNPGRRIAPDCLLPRNYTPVDLDSELRQHREGVSLPPSAYPAEKIRYDPDRSRLRLEYEYEGNPRKDEEFGCGSGNDANYHNYHRRGVGDLPPRHDLPNGGFGRAPPAMSREINIDLKPGGYVRGYSVEFEDKIPRVGRRDGHGEGKRWLNERRGPKELPDSRFELGTGEIGFAKNVDDDFRVGTREEYGWESGRYSGRGNNREFGHELWRPSLKKQVQKKSALLRIQNAKPSYRNREIEQLRNAGYSAESNTNDFRGKEQCGHVGHGMKQEEREGSPVELDISFESNSLVAKAIVTASTSTVVNDTNMNSVSDADLTPSEKRKKVSVSDSDCSGLEAAKVSRDVVTLNSSSCKVNDCSGSVNDLSLQNNVVNPCSQPCTRETDSVKNEVAGGSTKIHSGKSSPRVVKKKKVVKRVVKKVVGNPKSTMSNSRSVNKVHGCVQPDRVIPSSSSVSVPNKVEPCLEQKNITVDKMSMPGHSSYNLSKDRNQLLEDRNGDLTLLSLGPHSRSRECETDEDSDTQKGAARFESGLNIPNSQSCASTGEAKKIDSECLDANNSVHDLRRMPDTNMVPELLNGSTSKINDVGCDIKQLCQNQESQSCENYSNVRCPQNGFVIDVVDDSVLSSADNIGNSDRTNTYNSASSVYGLISGDLKGSKEKLTVTECGLTGESGFGLMVPTIITKYAILEENPDVINPASSSAMSAPSNSGKIKIHSGTDCIQNAIALTQGSYSGPVNLDDGTSVQCSDITNDAVKDVSPCYAAISSENCCTEEPFSSSNLSVGFGEGDTNNMKKRKARTHSKFLHSKMEGISPKPVNSVSHANDWDTASSVKVKDACCSEVLDQSVQSLDSNLESCLNGIITLHGKKELSEAELCVRDNEIDDANYLSLLSKGIKVTTTSELSDAVVVSKSCADFPVSFSDKQAPEKEVELSSMDVLFSAQSLSCSEDSRKLSDNFVGGSCDARYANNETMSSDHFELKNSDFASYSLREDLDIQFPLLDGECKENGTQMQTDIFTSGFNKGDMKDSLIHQQSIVSHPSDGDLEEDAPEAPSDVCSQGISEAPERGNLNCTSIQDENNCGDISAVEHGSDLPTCTSPIQHTNKIMKSANATGHSNPVERNLMRQSSQVNSKVSNNGPVSYFSENGSKNTLGGAMPKTQKGRSFIISKSNSKTSASSTHLSNPRTWRRSGNNSQGSLPGNKLSPGKFLPKRQILDRKGNFQNTSYIRKGNSLVRQPTTVSFTQISSVNKSPLSLDELSKSTRSGSRIDVSDQLTLKTGVAEVPQQSQRKPSLSIGTLSEENISSPLVEPPSSGCYENASDPRKLIDINDTPNSSKDDSNQYETPDNQSSPLSKLENQVEANDGHISSFSTRRIVYTKPKTNQLVATSNSRDEKSQTAFSEGYYKRCKNQLVRNMNQTVAVPKATLDSDGQGSCKVLCNRKLSKRQLHKVAGRSFKSLRASLVWTLCGKKSPKNGHNSWHSQRVLPQLFPWKRPTYLRSVIHNSASCSNSTFLSAVRKMDTVYTRSTRGFSLWKSKVLSVGGSSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKGAACVGSHANKRIFRIGSVRYKMDPSRRTLQRISDDESLLSATTDSGLVVKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKEGGKCPYVHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYICPTFEATGTCTKGTRCKLHHPEKQKGKKRKRSGDQSNSNSRGRYFASVPIDVSEAGIVVIPGQRDQSDDLEGELTDYISLQDDYTKTVGQSLALTLCDSDSLNLQLEDYEVNIKPTLLMKTKGTPRSSWSSVLQITSGEQTNKIYSTGSIYAIPVLPPKTITALLTSLIHIDCLSWNWNIGRRYTGAQSNDIEHVFHFFLRNKRAIFFAKWCSISRGNSAKISSLVWNVSSNSQYDFTRSSFIQTDFSQLKGSFDQSRNFIRNEGLEYHTLTNQRDTTKRKIDSLFGFFLSSNGTNINRIKAIL* 2243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1430 1460 - -
Amo01g2283 2242 ProSiteProfiles Zinc finger C3H1-type profile. 1933 1961 IPR000571 GO:0046872
Amo01g2283 2242 MobiDBLite consensus disorder prediction 86 126 - -
Amo01g2283 2242 ProSiteProfiles Zinc finger C3H1-type profile. 1829 1858 IPR000571 GO:0046872
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1317 1358 - -
Amo01g2283 2242 PANTHER CCCH ZINGC FINGER 421 2059 - -
Amo01g2283 2242 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 421 2059 - -
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1430 1503 - -
Amo01g2283 2242 MobiDBLite consensus disorder prediction 651 673 - -
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1476 1503 - -
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1 154 - -
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1317 1350 - -
Amo01g2283 2242 Gene3D - 1856 1910 - -
Amo01g2283 2242 ProSiteProfiles Zinc finger C3H1-type profile. 1884 1910 IPR000571 GO:0046872
Amo01g2283 2242 MobiDBLite consensus disorder prediction 37 85 - -
Amo01g2283 2242 Pfam Plant protein of unknown function (DUF825) 2156 2224 IPR008543 -
Amo01g2283 2242 SMART c3hfinal6 1829 1857 IPR000571 GO:0046872
Amo01g2283 2242 SMART c3hfinal6 1911 1937 IPR000571 GO:0046872
Amo01g2283 2242 SMART c3hfinal6 1938 1960 IPR000571 GO:0046872
Amo01g2283 2242 SMART c3hfinal6 1884 1909 IPR000571 GO:0046872
Amo01g2283 2242 SMART c3hfinal6 1858 1882 IPR000571 GO:0046872
Amo01g2283 2242 MobiDBLite consensus disorder prediction 1959 1980 - -
Amo01g2283 2242 Gene3D - 1911 1974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2283 Amo-Chr1 73518177 73528419 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g2283 DUF825 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2283 - - ahf:112706494 3945.97