Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2248 ATGAAAGGAATATCCTATCGGGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGTCGGCGGGCAATGTCACGAAATGTCCGCCGAGGTGGACAAATATGGGTACGGATATTTCCAGACAAACCAGTTACAGTAAGACCAACCGAAACGCGTATGGGTTCGGGAAAGGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGGTAGAATACTTTATGAAATGGGCGGAAATGATATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAAGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGGTCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAATATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGTATTTTAA 651 0.4194 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGNDMIQPQTHLNVADNSGARQLMCIRIIGASNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2248 216 SUPERFAMILY Ribosomal protein L14 95 215 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 TIGRFAM rplP_bact: ribosomal protein uL16 1 95 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo01g2248 216 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 95 215 - -
Amo01g2248 216 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 95 215 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 Hamap 50S ribosomal protein L14 [rplN]. 95 216 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 TIGRFAM rplN_bact: ribosomal protein uL14 95 215 IPR005745 GO:0003735|GO:0006412|GO:0015934
Amo01g2248 216 ProSitePatterns Ribosomal protein L14 signature. 154 180 IPR019972 -
Amo01g2248 216 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo01g2248 216 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo01g2248 216 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo01g2248 216 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo01g2248 216 Pfam Ribosomal protein L14p/L23e 95 215 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 Pfam Ribosomal protein L16p/L10e 2 93 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 SUPERFAMILY Ribosomal protein L16p/L10e 1 103 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 SMART Ribosomal_L14_2 95 216 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 Gene3D Ribosomal protein L14 82 216 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo01g2248 216 CDD Ribosomal_L16_L10e 7 95 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2248 Amo-Chr1 70676753 70677615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2248 102 212 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.522 3.40e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2248 K02874 - dct:114579343 298.516