Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2241 ATGCCACTTCTACGAATAGCTCTTAATCATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGTCAGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGA 411 0.438 MPLLRIALNHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLGRVRSKCWLGKRPVVRGVVMNPVDHPHGVVKGGPQLVEKNPQLLGVILHLEEEVEKGINIVII* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2241 136 SMART Ribosomal_L2_C_2 1 116 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo01g2241 136 SUPERFAMILY Translation proteins SH3-like domain 10 101 IPR008991 -
Amo01g2241 136 Pfam Ribosomal Proteins L2, C-terminal domain 10 104 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo01g2241 136 Gene3D Ribosomal protein L2, domain 3 65 134 IPR014726 -
Amo01g2241 136 PANTHER RIBOSOMAL PROTEIN L2 9 124 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo01g2241 136 Gene3D - 5 64 IPR014722 -
Amo01g2241 136 ProSitePatterns Ribosomal protein L2 signature. 86 97 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo01g2241 136 PANTHER - 9 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2241 Amo-Chr1 70659060 70659713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2241 11 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.157 5.03e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2241 K02886 - csin:14412467 212.231