Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2214 CCTTCTCCAATGGCAATTACTTCAATAGCAGCAGCTGCTTCTTCATCAAAGCTATTTTGCCCGCATGCCCCTCCATCTTCATCTTCCACTTCCACTTCCACTTGCCTCTTCACAACAGCCACCCACCTCTCCTCTTCTTTCCTCAAACCCTCCATAATCCTCCACCTAACTCCTTATTCCTCCTCCTCTGCCGTCACCACCACCACCACCACCACCCCCTACCGCCGCCGCTCCCTCACTGTCCGCGCTGCCCGCGGCAAGTTCGAGCGCAAGAAGCCACACGTCAACATCGGCACCATAGGCCACGTCGACCATGGCAAGACCACCCTCACCGCCGCACTCACCATGGCCCTCGCCGCCCTCGGCAACAGCGCTCCCAAGAAATACGACGAGATTGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACTATCAACACTGCTACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCTGACTACGTCAAGAATATGATCACCGGTGCCGCACAAATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCTCAGACCAAGGAGCACATCCTCCTCGCCAAGCAGGTTGGTGTCCCCAACATGGTGGTTTTCCTCAACAAGCAGGACCAGGTGGATGATGAGGAGCTTCTTGAGCTTGTGGAGCTCGAGGTTCGTGAGCTTCTCTCCTCGTACGAGTTTCCCGGCGATGAAGTCCCCATTATCTCAGGTTCGGCCCTTCTAGCATTGGAAGCTTTGATGGCGAACCCTGCCATCAAGCGTGGTGACAACGAGTGGGTGGACAAGATTTATGCCCTCATGGATGCCGTGGATAACTACATTCCCATCCCTCAGCGCCAAACGGACCTTCCCTTCTTGCTTGCCATTGAAGATGTGTTCTCCATTACCGGTCGTGGGACTGTGGCGACCGGAAGGGTTGAGAGAGGGACTATTAAGGTTGGGGAAACTGTTGAGATTGTTGGTGTGAGGGAGACTAGGAGCACAACTGTCACTGGTGTGGAGATGTTCCAGAAGATTCTAGATGAGGCAATGGCTGGTGATAATGTGGGGTTGTTGCTTAGAGGTATTCAGAAGGTTGATATTCAAAGAGGAATGGTGTTAGCTAAGCCGGGGACTATTACCCCGCACACTAAGTTTTCTGCCATTGTGTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCACCATTCTTTGCTGGATACCGACCGCAGTTTTACATGAGGACCACTGATGTGACTGGGAAAGTGAGGTCGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCAGGGGACAGGGTTAAGATGGTGGTGGAGCTTATAGTACCTGTGGCTTGTGAGCAAGGGATGAGGTTTGCTATTCGGGAAGGAGGGAAAACTGTGGGAGCTGGTGTCATCCAATCCATCATCGAGTGA 1476 0.5461 PSPMAITSIAAAASSSKLFCPHAPPSSSSTSTSTCLFTTATHLSSSFLKPSIILHLTPYSSSSAVTTTTTTTPYRRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPAIKRGDNEWVDKIYALMDAVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGETVEIVGVRETRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVRSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2214 491 Gene3D - 84 295 IPR027417 -
Amo01g2214 491 Gene3D Translation factors 430 490 - -
Amo01g2214 491 Pfam Elongation factor Tu domain 2 317 385 IPR004161 GO:0005525
Amo01g2214 491 CDD EF_Tu 93 295 IPR041709 -
Amo01g2214 491 SUPERFAMILY Translation proteins 297 393 IPR009000 -
Amo01g2214 491 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Amo01g2214 491 TIGRFAM EF-Tu: translation elongation factor Tu 84 491 IPR004541 GO:0003746|GO:0005525|GO:0006414
Amo01g2214 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 318 IPR027417 -
Amo01g2214 491 CDD EFTU_II 303 389 IPR033720 -
Amo01g2214 491 Pfam Elongation factor Tu C-terminal domain 390 489 IPR004160 -
Amo01g2214 491 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 296 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 Hamap Elongation factor Tu [tuf]. 83 491 IPR004541 GO:0003746|GO:0005525|GO:0006414
Amo01g2214 491 CDD EFTU_III 392 486 - -
Amo01g2214 491 PANTHER ELONGATION FACTOR TU 22 491 - -
Amo01g2214 491 Pfam Elongation factor Tu GTP binding domain 92 293 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Amo01g2214 491 Gene3D Translation factors 298 426 - -
Amo01g2214 491 PANTHER ELONGATION FACTOR TU-RELATED 22 491 - -
Amo01g2214 491 TIGRFAM small_GTP: small GTP-binding protein domain 95 230 IPR005225 GO:0005525
Amo01g2214 491 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 390 490 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2214 Amo-Chr1 70017810 70019749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2214 90 489 Eukaryotic Initiation Factors Gene Family AT5G60390 30.137 8.10e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2214 K02358 - gmx:100793431 778.474