Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2203 ATGGAGATGGAGCGCGTCTTTGGATTCCCCCAACCTCACATGGATCGACGCCCAAGAAAGAGAGCTAGATTAGGCTGGGATATCCCTGAGGCCCCGAAGGCTCAGGTAGGATTATTTTGTGGACAAGAGGTTGGAACTATTTCAAGCTATGCTCCTTCATGGGGTCCCTCAGAACATACCAGTAGTTCTCTTTCTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTCAGCGAGATGATGACAAAGATGGCCATTACATTTTTGAGCTTGGAGAAAATTTAACTTCTCGCTACAAGATTCATAGCAAAATGGGTGAAGGAACTTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCGGGGGGTAAAGAAGTATCGGGAAGCAGCCATGATTGAAATTGAGGTGCTGCAGCAGCTTGGTAAACACGATAAAGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTCTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCGAATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCTCCCGAGTATGTCAAAGTTCCTGATTACAAGAGTTCATCAAGATCACCAAGTTCTTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACGACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGACACTATAGGGCACCTGAAGTTATCCTTGGACTGGGCTGGAGTTACCCGTGTGATATTTGGAGTGTGGGGTGTATATTGGTTGAGTTATGCACTGGTGAAGCTTTGTTTCAGACCCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTGCTTGGACCACTACCTCAGCACATGCTGAAGAGAGTAGACCGACATGCTGAAAAGTACATTAGAAGGGGTAGATTAGACTGGCCAGAAGGTGCAACCTCGAGGGATAGTATTAAAGCCGTAATGAAGCTTCCTAGGCTACAGAACCTTATCATGCAGCATGTTGATCACTCCGCTGGTGATCTTATACACCTCTTGCAGGGATTGCTTAGATATGATCCCTCAGAAAGGCTTACAGCCAGGGAAGCTCTAAGACATTCTTTCTTCATGAGAGATTACCTACGGAGATGA 1293 0.4416 MEMERVFGFPQPHMDRRPRKRARLGWDIPEAPKAQVGLFCGQEVGTISSYAPSWGPSEHTSSSLSVKGVARNGSPPQRDDDKDGHYIFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGVKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYIRRGRLDWPEGATSRDSIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAREALRHSFFMRDYLRR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2203 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2203 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Amo01g2203 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Amo01g2203 430 SUPERFAMILY Protein kinase-like (PK-like) 85 426 IPR011009 -
Amo01g2203 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2203 430 MobiDBLite consensus disorder prediction 53 84 - -
Amo01g2203 430 PANTHER KINASE AFC1 1 430 - -
Amo01g2203 430 CDD PKc_CLK 85 423 - -
Amo01g2203 430 MobiDBLite consensus disorder prediction 53 70 - -
Amo01g2203 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2203 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Amo01g2203 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2203 Amo-Chr1 69046144 69050234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2203 103 423 Core Cell Cycle Gene Families AT1G76540 25.672 1.19e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Amo01g2203 Pkinase 8.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2203 K08287 - gmx:100804452 835.484