Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2188 ATGAAGTGCATAAAGAACGAGACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGACTTTTAAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTCGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATAGAGACGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGTAA 495 0.3859 MKCIKNETSRQVTFSKRRNGLLKKTFKLSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIETLKEQEKCLLEENRKLKEK* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2188 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Amo01g2188 164 PANTHER MADS-BOX PROTEIN SOC1 1 164 - -
Amo01g2188 164 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Amo01g2188 164 Pfam K-box region 89 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo01g2188 164 Coils Coil 115 164 - -
Amo01g2188 164 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Amo01g2188 164 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Amo01g2188 164 ProSiteProfiles K-box domain profile. 81 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo01g2188 164 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Amo01g2188 164 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Amo01g2188 164 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Amo01g2188 164 Gene3D - 6 80 IPR036879 GO:0003677|GO:0046983
Amo01g2188 164 PANTHER MADS BOX PROTEIN 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2188 Amo-Chr1 68187671 68205655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2188 1 164 MADS-box Gene Family AT4G22950 63.415 4.74e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo01g2188 K-box 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2188 - - ahf:112805426 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2188 01 68187671 68205655 Amo11g1774 11 83907167 83917285 hybridization