Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2175 ATGGCTTCAATTCTTCAATATTGTAGCTTTAGTAGCTTTTTGTTGGTTACATTAACATGCATGTTCACAACCATTGGAAATGCAGCATTAGCAACGGGCATATTTAGACCTAGTGATTGGGCTCTTGCACATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTTCGAACGGTTATGGAACAGACACAGCAGCATTGAGCTCAACCTTGTTCAACAATGGATATGCATGTGGGACTTGTTATCAGATAAAGTGCTACCAATCGAGTGCATGTAATGCCAATGTGCCCTACACCACTGTAACCGCCACAAATCTTTGTCCTCCTAATTGGGCCGAGCCCTCTGATAATGGCGGTTGGTGTAACCCACCAAGGGCCCATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGACTGCTGGCATTGTGCCTTCCAATAATTTAATTTACAAAATAAATTTTAATTACAAAATAAATTTTAATTACAAAATAAATTTTAATTACAAAATAAATTTTAACTTTTTATTTTATTAA 576 0.3854 MASILQYCSFSSFLLVTLTCMFTTIGNAALATGIFRPSDWALAHATFYGDESASATMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACNANVPYTTVTATNLCPPNWAEPSDNGGWCNPPRAHFDMSKPAFMKIAQWTAGIVPSNNLIYKINFNYKINFNYKINFNYKINFNFLFY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2175 191 SMART dpbb_1 75 161 IPR007112 -
Amo01g2175 191 SUPERFAMILY Barwin-like endoglucanases 39 158 IPR036908 -
Amo01g2175 191 PANTHER EXPANSIN 2 160 - -
Amo01g2175 191 PANTHER EXPANSIN-A15 2 160 IPR002963 GO:0009664
Amo01g2175 191 Pfam Lytic transglycolase 75 158 IPR009009 -
Amo01g2175 191 Gene3D - 26 168 IPR036908 -
Amo01g2175 191 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 158 IPR007112 -
Amo01g2175 191 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Amo01g2175 191 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Amo01g2175 191 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Amo01g2175 191 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Amo01g2175 191 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Amo01g2175 191 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Amo01g2175 191 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2175 Amo-Chr1 66851565 66854191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2175 1 158 Expansin Gene Family AT1G12560 57.595 4.29e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2175 - - ahf:112732297 339.732