Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2166 ATGGCATCGTCATCATCAAACAACAGCGGCTACGATGTTCCCTGGGTTGAGAAGTACCGACCCTCTAAGGTCTCCGACGTCGTTGGCAACCAAGATGCCGTCTCCCGCCTTCAAGTCATCGCCCGAGACGGCAACATGCCCAATCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACAAGCATACTAGCACTAGCTCATGAGCTTCTCGGTTCCAATTCCAAGGAAGCCGTTCTTGAGCTCAATGCTTCCGATGACCGTGGAATTGATGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGATGAAGCTGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGAGGAGGACAATGGAGATATACTCGAATACTACTCGGTTTGCCCTTGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGCTTGTCTGATGAGGAGATACTCGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAACTTACAAGCAACATACAGTGGATTCCAGTTTGTTAACCAACAAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCATTGCATGTGAAGAATATGGTGCGTAATGTTCTCGAAGGGAATTTCGATGAGGCTTGTTTGGGCCTCAAACAACTATATGACTTAGGATACTCCCCCACAGATATCATCACAACAATTTTCCGTATTATAAAAAATTATGATATGGCTGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGGTTGGTTCCTATCTTCAAATGTGTGGTCTATTGGCTAAGCTTTCTCTAGTCCGTGAAACAGCTAAAGCTGCATGA 996 0.4578 MASSSSNNSGYDVPWVEKYRPSKVSDVVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKAA* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2166 331 CDD HLD_clamp_RFC 170 232 - -
Amo01g2166 331 Gene3D - 235 327 - -
Amo01g2166 331 Gene3D - 171 234 - -
Amo01g2166 331 PANTHER REPLICATION FACTOR C SUBUNIT 2 7 329 - -
Amo01g2166 331 SMART AAA_5 45 177 IPR003593 -
Amo01g2166 331 CDD AAA 28 165 - -
Amo01g2166 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Amo01g2166 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 329 - -
Amo01g2166 331 Gene3D - 7 170 IPR027417 -
Amo01g2166 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524|GO:0016887
Amo01g2166 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Amo01g2166 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2166 Amo-Chr1 65971742 65975524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2166 10 330 Core DNA Replication Machinery Family AT1G63160 91.277 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2166 K10755 - qsu:111999495 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2166 01 65971742 65975524 Amo11g1734 11 79835015 79839037 hybridization