Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2163 ATGGTCGAGTTTCGCCGACCTCAGATCCGTCACCAGCGATTCGCCGCCGCTGAAGCTCGTCACTGCTGCTGTGCCACTGCCGCAGAGAGAGGGAGTGATGCGATTAAAGAGAGGAGGAGGAAGGAGACCCGTGCGCCGTCGGAGCCAGTGTCACCCAGTCGCCGCCGTTCGTGCCTTGCCGTTGCCATTCAAGCCACTAGCAAGTCACCATCGATGAAGCTTCAGCCGCCACCGTCGATTGTCACTGGGGAACAACCGTCGTGCCTTTGGTCGCTGGAATCACAGATTGGAGAGAAGAGGGCTACCACTCCTATTGCTGCTGCTTCGGTCTTTTATCGTAAGCGGTCTCTGTTTTCAATTGTAAATGGCCTTGATGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTAAGGGACCTTTTTACTGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAACGTGATTTGCATGTAATTATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGTTCAACTCGCGATGGTATTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCGCTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGATATGCTTGACGAGGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAAATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAATAAGATGAAAGAAAATTCTTTTCTTGCTCCCGATGTAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCATAAAGCAAGTTGAGGAAGAGAATATTAAGGTTATCGAATTCTGGAACAGTAACTTCAAAACCACATATCTCAAGACTCTGAAACTCTTTAGAGGTGCAACCAAAGAAGGGTGA 984 0.4573 MVEFRRPQIRHQRFAAAEARHCCCATAAERGSDAIKERRRKETRAPSEPVSPSRRRSCLAVAIQATSKSPSMKLQPPPSIVTGEQPSCLWSLESQIGEKRATTPIAAASVFYRKRSLFSIVNGLDVLSKFVGETEKNVRDLFTDAEQEQRSRGDERDLHVIIFDEIDAICKSRGSTRDGIGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVTKNYSGAELEGVVKSAVSYALNRQLSLEDLIKQVEEENIKVIEFWNSNFKTTYLKTLKLFRGATKEG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2163 327 ProSitePatterns AAA-protein family signature. 203 221 IPR003960 GO:0005524|GO:0016887
Amo01g2163 327 CDD AAA 107 233 - -
Amo01g2163 327 PANTHER VESICULAR-FUSION PROTEIN NSF 119 302 IPR039812 GO:0016887|GO:0035494
Amo01g2163 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 287 IPR027417 -
Amo01g2163 327 Gene3D - 117 233 IPR027417 -
Amo01g2163 327 MobiDBLite consensus disorder prediction 33 49 - -
Amo01g2163 327 MobiDBLite consensus disorder prediction 33 54 - -
Amo01g2163 327 Pfam ATPase family associated with various cellular activities (AAA) 116 232 IPR003959 GO:0005524|GO:0016887
Amo01g2163 327 Gene3D - 234 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2163 Amo-Chr1 65815666 65821082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2163 75 299 Calmodulin-binding Proteins AT3G56690 32.489 3.12e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2163 K06027 - gmx:100779259 325.865