Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2160 ATGGCGGCGACACCGTCGTCGAACCGTTCCCCCGACGACTTCACCGTCGATCAAACGCCGCTAATCGCGAACTCTAACGGCGGCGGTGGTGGAGGCGAATCGAACTCCGGCCGCAGATTCGTTCGGCGGCAGAGCCTCCGCCAGGCTGCGCGGTTTCTCCGGCAGGGGAGCGGGCGTAGGTCGATGCGGGAGCCGTCGATGGTGGTGAGGGAGACGGCGGCGGCGCAGCTGGAGGAGCGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTGCTCGACGTCCTCTGGAACTTCGCGTTCGTGGTGGCAGGCGTCGCTGTGCTAGTCCTGAGCCGGAACGAGTCGCCAAACGCGCCGCTGAGGTTGTGGATCTTAGGGTACGCGGCGCAGTGCATTGTCCACGTGGCGTGCGTGTGCGTTGAGTATCGGAGGAGGAGGAGGAGGACGGAGCAGCAGCAGCAGAGCACGAGCGACGTCGTTCAAGGTGTTGATGGAGTTGGCGTCGGGGGAAGTGGAGATTTAAGCTCCGGTTCCATGGAAGGTTCTGGACACTATTTGACATTGGCTCAATTCGATGAGGACGGCACAAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCCTTTATTTGGTGGGTTGTTGGGTTCTATTGGGTATCAGCTAGTGGTCAAGACTTAACCCAAGAGGCTCCTCTGCTTTATTGGTTATGTATAGTCTTCCTGGGTTTCGATGTTTTCTTTGTCGTTTTCTGCATTGCACTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGCATCATTGCACTTCTATATGCAGTTGCAGACCAGGAAGGGGCATCTAAAGAAGATATTGAGCAGTTGTCGAAATTCAAATTCCAAAGGAATGAAAACAATGAGAAACTCACTGATAATACACAAGTATCTGCTGGGGGAGTAATGATAGAATGCCGAGTTGATTCACCTATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAGGATGGTGTTGATCTAAGACAACTTCCCTGTGGTCACCATTTTCACTGTGCTTGTGTGGACAAATGGCTATACATTAATGCTACCTGCCCCCTCTGCAAGTATAATATCCTAAAAAGTAGCAGAAGTGCTCAAGAGGAAGTGTAG 1185 0.5266 MAATPSSNRSPDDFTVDQTPLIANSNGGGGGGESNSGRRFVRRQSLRQAARFLRQGSGRRSMREPSMVVRETAAAQLEERQSDWAYSKPVVVLDVLWNFAFVVAGVAVLVLSRNESPNAPLRLWILGYAAQCIVHVACVCVEYRRRRRRTEQQQQSTSDVVQGVDGVGVGGSGDLSSGSMEGSGHYLTLAQFDEDGTSMAKHLESANTMFSFIWWVVGFYWVSASGQDLTQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRNENNEKLTDNTQVSAGGVMIECRVDSPIEHVLSDEDAECCICLSAYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSRSAQEEV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2160 394 MobiDBLite consensus disorder prediction 1 40 - -
Amo01g2160 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 394 - -
Amo01g2160 394 SMART ring_2 339 379 IPR001841 -
Amo01g2160 394 Pfam Ring finger domain 338 380 IPR001841 -
Amo01g2160 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Amo01g2160 394 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Amo01g2160 394 CDD RING-H2_RNF111_like 338 382 - -
Amo01g2160 394 PANTHER TARGET OF ERK KINASE MPK-1 3 394 - -
Amo01g2160 394 SUPERFAMILY RING/U-box 328 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2160 Amo-Chr1 65302191 65306929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2160 42 387 C3H Transcription Factor Family AT1G68070 50.284 5.31e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2160 - - ahf:112722254 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2160 01 65302191 65306929 Amo11g1705 11 76323673 76325525 hybridization
Amo01g2160 01 65302191 65306929 Amo05g0863 05 10906930 10911153 PCT