Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2142 ATGGCGGAATCTCTGACGTGCTCCCCTGTCTCCACACTTTTGCAGCCATCGGCACCAGCACCGCCGCAATCTTCCGCATTCCTGAGAGCTCCGCCACTTGGACTAAGAAATCCCTTGACTTACGAACACAGGGGGATCGTGTTTCTAATTATCGATTCCACAGAATCCGTCATCGACATCGTGTCGTTCTTCCGGTTTCCTCCCATCGGGATCCATGGCTTGGCTCACTCCGTCGTCCAGGCTTCTGGTTACGACATAGATGAAGGTTACCTTGGTAGTTACCAAGAAGAGATGTTGATTATGTTCCAAGTTGAGTCTGTTGAGGGAGTGAAGAATGTTGGTGAGATTTTAGCCGTTGATGGCATTGATTTCATCCAAATGGGATCGTTGGATCTGAGTGCGAGTATGAGGTACTTGTGGGACCCAGGAAATAGGAACGTGAGGCAGTTAATGAGGGAGGCTGAGGCTAACATTCTAAAAAGGCACAGCGGTGGTGGCTTCGGCATGGGGACTTATTTGTCTGGAAGCGCTGCTGTGGAAGATGTGAAGAAATTCAGGTTGAGTTTGATTGATGAAAAACATGATAGTGAGGAGGAAGAGGACAAAAATGGTGCTGAAAGAAAGATGAGAAAGAAAGAGAAAAGGCGAAGTTCTCTATTTATGGTGTTGGGTTGCTACTCTGGAATTTGGAAATTAAGTAACATTATCCAATTCTATGCAGTGGCTAGGCGTAAAATGATGTCTAGAAACGAGGATGATGTCAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGACTATCAACCGAATGCAGAAGATGAGGCTGAAGATGACAATGTGGATTCGCTGGATTCTACTAGTAAGAAGGATGAGGCTTGCCAATTTTATAATGCTTATTCTTGTTGGCATGGATTTGTAACGAGAAAGGATGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAATAAGGAGGGCAGGAGGAATATGAGGTATCTTGATCTGGATGATAAATCAAGGGAGGCAAGGTCACTAACACGAACCAAGTGTCCGGCTTGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTTCCGGCCAATTGTCGTCTCACTATTACTGATAAAGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGACCTACAATATTATGGGGGCCTTAAAAGAGTATAGAAACAATGAATTAATAGCTAACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCGAAACATTTTCAAGGAAATTTGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACTCGGCCAAAGATCGACAAGTGGAAGTCGATAGAAGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTATTTGAATCACGTGGTATTCCCTGTAGTCATGTTTTCTATTCCATGAAGTTCGAAAACATACTTGAGTTTCCAAATTCGTTGATCTACAAAAGATGGACAAAGAATGCAAAGAATGAATTTATTAGCTTAGAAATGCTTGTGAATGATGACGTCGAAAAGGTCTTAAAGTTTCGAGTTGGTGCATTGGCATCGAATTGCAACAAGCTATGTGATATTGCTTGCAAGGATCTTGTAGACTTTGACGAAATCCAGTCTAAACTTGTGAAGTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGGGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCACTGTCCAGATCTGATGCAGCATAGTATGCAAGTTAAGTCCGAACATCATTCAGGACCTAAGACCAAGCCTTTTAAAAAGGGTGGATCAAGGAAATTTACAACGACAGGTATGAGGAACCGGAAGGGTAACGACAACACATTTGATGAGGTGAAGGAGTCACAGCAGGACAAGGTACATTCATTCACAAACTATGAATGCTTTAATGATGTCATGGATGAAAAATGTGACACACCACATGTGCAGAACGATGTCCGAGATCTGTTACCATCTTCAATGCCTTGTGGAAACAAACAAGGATCGTATATGGCATTGTTCGTGTCGATGCATAGGACACTTTGA 2343 0.4324 MAESLTCSPVSTLLQPSAPAPPQSSAFLRAPPLGLRNPLTYEHRGIVFLIIDSTESVIDIVSFFRFPPIGIHGLAHSVVQASGYDIDEGYLGSYQEEMLIMFQVESVEGVKNVGEILAVDGIDFIQMGSLDLSASMRYLWDPGNRNVRQLMREAEANILKRHSGGGFGMGTYLSGSAAVEDVKKFRLSLIDEKHDSEEEEDKNGAERKMRKKEKRRSSLFMVLGCYSGIWKLSNIIQFYAVARRKMMSRNEDDVKNDSDNDLGDDFDYQPNAEDEAEDDNVDSLDSTSKKDEACQFYNAYSCWHGFVTRKDDVVRDNQGRIISRQLVCNKEGRRNMRYLDLDDKSREARSLTRTKCPAWLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANCRLTITDKVQVENLHNFGVKTYNIMGALKEYRNNELIANFKSQCSEPVMITSLEVYERSASCYFTRNIFKEICNEIQRAGALNIKVLSTTLDKVEFSVTALGDSAKDRQVEVDRSKNLFSCSCKLFESRGIPCSHVFYSMKFENILEFPNSLIYKRWTKNAKNEFISLEMLVNDDVEKVLKFRVGALASNCNKLCDIACKDLVDFDEIQSKLVKLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKHCPDLMQHSMQVKSEHHSGPKTKPFKKGGSRKFTTTGMRNRKGNDNTFDEVKESQQDKVHSFTNYECFNDVMDEKCDTPHVQNDVRDLLPSSMPCGNKQGSYMALFVSMHRTL* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2142 780 ProSiteProfiles Zinc finger CCHC-type profile. 656 671 IPR001878 GO:0003676|GO:0008270
Amo01g2142 780 SUPERFAMILY Retrovirus zinc finger-like domains 642 678 IPR036875 GO:0003676|GO:0008270
Amo01g2142 780 SMART 26again6 515 542 IPR006564 GO:0008270
Amo01g2142 780 PANTHER 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE 44 180 - -
Amo01g2142 780 Gene3D - 38 186 IPR040442 -
Amo01g2142 780 Coils Coil 195 215 - -
Amo01g2142 780 MobiDBLite consensus disorder prediction 1 23 - -
Amo01g2142 780 Pfam HpcH/HpaI aldolase/citrate lyase family 41 160 IPR005000 GO:0003824
Amo01g2142 780 ProSiteProfiles Zinc finger SWIM-type profile. 504 540 IPR007527 GO:0008270
Amo01g2142 780 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 39 156 IPR015813 GO:0003824
Amo01g2142 780 Pfam FAR1 DNA-binding domain 295 385 IPR004330 -
Amo01g2142 780 MobiDBLite consensus disorder prediction 682 720 - -
Amo01g2142 780 MobiDBLite consensus disorder prediction 257 281 - -
Amo01g2142 780 MobiDBLite consensus disorder prediction 1 22 - -
Amo01g2142 780 MobiDBLite consensus disorder prediction 251 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2142 Amo-Chr1 64586759 64591496 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g2142 HpcH_HpaI 9.9e-18 CL0151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2142 - - adu:107490387 717.227