Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2115 ATGGCCACTTTCACGTTTTCATTGTGCCCTCACACCCTCTGTTACCGCCCTTACACCACACGCTCTTCTTCCCTTTCTTGCTCTTTCCCCTCTTCTGCTCTCCCAGATAATGTTGGATCTGAAGTACCGAGAAAACGAATAAGAAGAATAGAAGGTCCAAGAAAGAGCATGGAAGACTCTGTTAAACGTAAGATGGAGCAATTTTATGAGGGATCCGATGGACCACCCATCCGTGTTCTTCCTATTGGTGGATTAGGTGAAATTGGAATGAATTGCATGCTTGTTGGTAACTATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAAAAAATCATACCCGATACAACATTCATAAAAAAATGGAGCCACAAAATTGAGGCAGTTGTTATAACACATGGGCATGAAGATCATATTGGTGCGTTACCTTGGGTCATCCCAGCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTCACAATGGAGCTTATTAAGAAACGCTTGAAGGAACATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTATGGCAGGGCCTTTTGAGATAGATCCAATCACGGTGACCCATTCTATTCCTGATTGCTGTGGTTTAGTACTTCGTTGTTCTGATGGGACTATTCTTCACACCGGGGACTGGAAGATTGATGAAACACCATTAGACGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAGCTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTCGTGGCAGATGCATTGTTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATTACGACTCAGTTTGCATCAAATATACATCGTCTGGGAAGCATCAAAGCTGCTGCTGATTTAACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCGAATTGATCCATCCACTTTGATTAAAGCGGAGGATATTGATGCTTATGCTCCAAAGGATTTGCTAATTGTTACAACAGGCTCCCAAGCAGAACCTCGTGCGGCCTTGAATCTTGCGTCTTATGGAAGTAGTCATTCTTTCAAACTAACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGCAATGAGTCCCGTGTTACAGACATGCTAAACCGCATATCAGAAATTGGATCAACAATAGTTATGGGGAAGAATGAATGTCTGCACACGTCTGGTCATGGGTATCGCGGAGAATTGGAAGAAGTACTTAGAATTGTGAAACCACAGCATTTTCTTCCCATACATGGGGAACTCTTGTTCTTGAAAGAACATGAATTGCTTGGAAAGTCCACTGGCATTCGACACACCACTGTTGTTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGCTTCATTTCACTTGGAACAGAAAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCGAATGATCTCCTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTCCGTCCTCAAAATCTAGATGATCAAGTTGGAAACACATTGAAAGGCAAGATAAGAATTACTACAAGATGCCTGTGGCTTGACCAAGGGAAGCTGATGGATTCACTTCATAAAGCTGCGAATGCTGCCCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGCTGAGGAAAATGGTGAGGAAGTACAGTGGAAAGCGGCCTGAAGTTATTGCCATTGCTGTAGAAAATCCTGCAGCTGTTATTGAAGATGAGATAAAGACAAAGTTGTCTGGCAAAGCCCATGTGGACGGGATATCAACATGGAGAAGAGTGTTGGATGGGCATGGGAAGGAAAATAACTCCACCAAAATGCCAATTAGAGGTGTTGAAGGATTAGCATCTGAAGAATACACTACCACCTCAAGTGGAGATGATGATGATATTTCTGAAACAGAGGATCAAGATGAATTTTGGAAGTCATTCGTCGATTCATCGTCAGCTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTCCTCAAAAGGAGAATAAGCCCCAACTGAAGAAAGATAGTTCTGAAGAGTCTGAAGAAGAAATGTCCGAAAAGACATCAAATTTAGAATCCAAATATTCAAAATCTGCAAAGAGAAATAAATGGAAACCTGAGGAAATTAAGAAGCTGATTGATATGCGGGGTGAACTACATGATCGATTCCAAGTAGTAAAGGGGAGGATGGCCCTTTGGGAAGAAGTATCTCGGAACTTGTCGGCAAATGGGATCAGCAGAAGTCCTGGGCAGTGCAAATCTCTATGGACATCTTTGTTACAGAAATATGAGGAGGTCAAGAATGAGAAGAATACCAAGAAAAAGTGGTCATATCTTGAGGACATGGAGAGGATTCTATCTGAAAATGAGGAACTGGCAACAAAATGA 2592 0.4155 MATFTFSLCPHTLCYRPYTTRSSSLSCSFPSSALPDNVGSEVPRKRIRRIEGPRKSMEDSVKRKMEQFYEGSDGPPIRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFMAGPFEIDPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSIKAAADLTGRKLVFVGMSLRTYLDAAWKDGKARIDPSTLIKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVTDMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVVKNGEMLGVSHLRNRRVLSNGFISLGTENLQLKYSDGDKAFGTSNDLLIDERMRIALDGIIVVSMEIFRPQNLDDQVGNTLKGKIRITTRCLWLDQGKLMDSLHKAANAALSSCPVNCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIAVENPAAVIEDEIKTKLSGKAHVDGISTWRRVLDGHGKENNSTKMPIRGVEGLASEEYTTTSSGDDDDISETEDQDEFWKSFVDSSSAEKSIKANNGYVPQKENKPQLKKDSSEESEEEMSEKTSNLESKYSKSAKRNKWKPEEIKKLIDMRGELHDRFQVVKGRMALWEEVSRNLSANGISRSPGQCKSLWTSLLQKYEEVKNEKNTKKKWSYLEDMERILSENEELATK* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2115 863 Gene3D - 81 493 IPR036866 -
Amo01g2115 863 SMART Lactamase_B_5a 89 286 IPR001279 -
Amo01g2115 863 PANTHER RIBONUCLEASE J 5 863 - -
Amo01g2115 863 MobiDBLite consensus disorder prediction 666 708 - -
Amo01g2115 863 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Amo01g2115 863 MobiDBLite consensus disorder prediction 723 768 - -
Amo01g2115 863 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Amo01g2115 863 Gene3D - 278 428 IPR042173 -
Amo01g2115 863 MobiDBLite consensus disorder prediction 736 768 - -
Amo01g2115 863 CDD GT1 770 835 - -
Amo01g2115 863 Gene3D - 772 833 - -
Amo01g2115 863 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Amo01g2115 863 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 433 475 IPR011108 -
Amo01g2115 863 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 5 863 - -
Amo01g2115 863 SMART sant 768 830 IPR001005 -
Amo01g2115 863 Pfam Myb/SANT-like DNA-binding domain 769 853 IPR044822 -
Amo01g2115 863 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2115 Amo-Chr1 62626409 62634909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2115 772 856 Trihelix Transcription Factor Family AT3G25990 28.889 9.91e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo01g2115 Lactamase_B_2 4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2115 - - gmx:100814619 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2115 01 62626409 62634909 Amo11g1665 11 72461767 72466187 hybridization
Amo01g2115 01 62626409 62634909 Amo08g2472 08 38512974 38520657 PCT
Amo08g2472 08 38512974 38520657 Amo01g2115 01 62626409 62634909 PCT