Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2100 ATGGCGGCAGGGCGAAAAGGTGTTGTTCTGAGAAGAGAATCTTACAGAGAGAGTTCCATCAAGGAGCTTGATCACTGTAGGCATGGTTCTGTACAGAATGGGTTTCATGTTGGAAAAGAGGAGGAGAGAGAGGAAGGTGAGCTCTGTGTCGAACCTGGGGTGCGTGACTATGAACCTGCCTCAGGGTTTCAAGCAGTTGATGGAGATGAGGTCTTGCCACCACCGGGAAAGAGAAGAAAATTTTCTCCGATTGTGTGGGATCTACCAGAGAAGGAAGGAGTGATCCCCTCCAAAAAAGGGGCCACACAGGTTATTACTGTGTCTCACTCCTGTCCAACTCTGTTGAAAAGCCCGGTACAAGATGGTCGTTTGCATGGGGGTGTCTCTAGGATACCTCCACAAAATTCATCTTGTGTCTTGCAGTCAGGGCATGATGACCAAGAAGCAGATGAAGAGAACAATGCCCAAGGGTGGAACATCAAAATGTCTAGATGGGCTTCTGATGGTCAATCACCGGTGGGTGCTGTTGATGAATTTAATTTTGGCAAAGTGAAGCCAAGTCCTGAGATTGGTGAATTTCAAAGAGAATGTTCAGAAAGCACAATCACTAGATCCTCAGGAAGCAATGGACGAGATAATAGTGGGGGCCACTTTGATGGTAGTGATTCTGAAAAGGAATTCCCTACTGACTCCATGGTCGATGATGAGGAACAGAGTGATGTTGGTGATTATGCATGTGATTCTGATGAAGATGCCGGTTTAATGCACCTGCAGAGAAATATAAACATGCTTCAGAGTTGCAGAAGTGTGTGTGAGTTTGAAATGATTAAGAAAATCAACGAAGGAACTTATGGTGTTGTCTATAAGGCTAGGGATAAGAAGACCGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAATATAGAAAGGGATGGCTTTCCATTGTCATCCTTGAGGGAAATTAACATTCTCTTGTCTTTTGATCACCCCTCCATTGTGGATGTTAAAGAAGTAGTTGTGGATAATTATGATGGTACTTTCATGGTGATGGAGTACATGGAGCATGACCTTAAGGGACTGATGGAGGCAAAGAAACAGCCCTTCAGTATGGGTGAAATAAAATCTTTGATGCTGCAACTTCTTGAAGGTGTCAAGTATCTCCATGACAATTGGGTTCTCCATAGGGACTTAAAGACATCAAACATTCTGCTGAACGACAAGGGGGAGCTGAAAATATGTGACTTTGGGTTGTCCCGGCAGTTTGGAAGCCCACTGAAGCCATATACTCCTATTGTTGTGACACTATGGTACAGGGCTCCAGAGCTTTTGTTAGGAGCTAAGGAATATTCAACCGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAGTTGGTTGCCAAGGAACCTCTGTTCACGGGTAGAACAGAACTTGAACAAATTGATAAGATTTTTAGGACCCTGGGTACACCTGATGAGAAGATTTGGCCGGGCTTATCTAAATTACCTGGTCCTAAAGCAAAATTTGTTAAACAACCGTACAATATGCTAAGGAAGAAATTTCCAGCCACATCTTTTACTGGTTTACCAGTTCTGTCTGAGCTAGGATTCGACTTGTTGAAGAAGCTTCTAACTTACAATCCAGAAGAGAGGATAAGTGCAGAAGAGGCCCTTCTTCATGATTGGTTCCATGAAGTCCCCCTTGCAAAATCTGATTTCAAGCCAATTTTCCCTCCTTTGCGTGGCCAGGCCACTTTCAGTGCGGATTAA 1770 0.4401 MAAGRKGVVLRRESYRESSIKELDHCRHGSVQNGFHVGKEEEREEGELCVEPGVRDYEPASGFQAVDGDEVLPPPGKRRKFSPIVWDLPEKEGVIPSKKGATQVITVSHSCPTLLKSPVQDGRLHGGVSRIPPQNSSCVLQSGHDDQEADEENNAQGWNIKMSRWASDGQSPVGAVDEFNFGKVKPSPEIGEFQRECSESTITRSSGSNGRDNSGGHFDGSDSEKEFPTDSMVDDEEQSDVGDYACDSDEDAGLMHLQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIERDGFPLSSLREINILLSFDHPSIVDVKEVVVDNYDGTFMVMEYMEHDLKGLMEAKKQPFSMGEIKSLMLQLLEGVKYLHDNWVLHRDLKTSNILLNDKGELKICDFGLSRQFGSPLKPYTPIVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELVAKEPLFTGRTELEQIDKIFRTLGTPDEKIWPGLSKLPGPKAKFVKQPYNMLRKKFPATSFTGLPVLSELGFDLLKKLLTYNPEERISAEEALLHDWFHEVPLAKSDFKPIFPPLRGQATFSAD* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2100 589 MobiDBLite consensus disorder prediction 187 245 - -
Amo01g2100 589 MobiDBLite consensus disorder prediction 115 152 - -
Amo01g2100 589 MobiDBLite consensus disorder prediction 229 245 - -
Amo01g2100 589 Gene3D Phosphorylase Kinase; domain 1 256 354 - -
Amo01g2100 589 CDD STKc_CDC2L1 267 563 IPR045267 GO:0004674|GO:0005524|GO:0006468
Amo01g2100 589 Gene3D Transferase(Phosphotransferase) domain 1 355 575 - -
Amo01g2100 589 SUPERFAMILY Protein kinase-like (PK-like) 267 567 IPR011009 -
Amo01g2100 589 PANTHER CYCLIN-DEPENDENT KINASE 181 578 - -
Amo01g2100 589 Pfam Protein kinase domain 273 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2100 589 ProSiteProfiles Protein kinase domain profile. 273 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2100 589 PANTHER CELL DIVISION PROTEIN KINASE 181 578 - -
Amo01g2100 589 SMART serkin_6 273 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2100 589 MobiDBLite consensus disorder prediction 59 84 - -
Amo01g2100 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Amo01g2100 589 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2100 Amo-Chr1 62007210 62010721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2100 268 568 Core Cell Cycle Gene Families AT5G10270 45.110 3.46e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Amo01g2100 Pkinase 3.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2100 K08818 - gmx:100788840 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2100 01 62007210 62010721 Amo11g1648 11 71644066 71647669 hybridization