Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2060 ATGGTGCAGGATCCTTCTTGCATAATCTTCTATTCCTGTCCCAACCTATCCGACTTGGATGATACTACTACTCCTTTCTATACAGTAAAAGACCGTTTTAGCCCCGAAGAGAAAAGAATCTTGGAGAATACTTTCATCCACTGGAGCCACACTATAAGCTCTTCTTTGGATGAAATTTCACAAACCAAAAGGCTGAGAAGAACCACAAGCATCCCAATTTCTCTAGAAAATCTCTCAATAAACCCGATTTATGGCTCGAATTATAATAAAAATAGCATCCAAACGCACATCAGAGATCACATAAAAAGTTGTTCGCAGATGTACCGCGCTGCCGAGGCAGTTGAAGAGGCAGCACAAGACATGATTAATTCGGAAGGCGGCGGAGAAGATGGCTGCGATGGAATGAGGCTTGTTCAACTGCTAATCTCTTGCGCCGAGGCCGTTGCGTGTCGTGACAAATCGCACGCTTCGATACTTCTATCAGAACTCAAGTCTAGCGCCTTGGTTTTCGGCACCGCCTTCCAGCGAGTAGCGTCCTGCTACGTGCAGGGCTTGTCCGAGCGATTGTCTTTGATTCAGCCGTGTTTTGGTCCGGTGGCGGTGGCGCAACCAATGATGAACATAATGGACGCCGCTTCGGAGAAGATGGAAGAAGCGTTCAGGCTGGTGTATGAAATCTGTCCACATATTCGATTCGGACATTTCGTGGCAAATTCCGCGATAGTGGAAGCCTTTGAGGGTGAGAGTCTTGTCCATGTGGTAGACCTCGGCATGAGCCTAGGCCTATCACATGGTCACCAATGGAGGGGCCTGATCCAATCCTTGGCCAACCGCTCCGGGGCCTGTGTTCGCAGGCTCCGGATCACCGCGGTTGGTCTCTGTATTGGCAGATTCCGGATCATTGGTGATGAACTCTCTGTTTACGCGAATAGCATGGGAATCAACTTTGAATTCTCCGTTGTGCAGAAGAATCTAGAGAATCTAAAACCTGAAGATGTCATAAAAGAAGATAATGAGGTTCTTGTGGTGAATAGTATCCTTCAGTTGCATTGTGTTGTTAAAGAAAGCCGTGGCGCTTTGAACTCTGTGCTTCAGATGATTCACGGGCTTTCGCCAAAGGTATTGGTTATGGTTGAGCAGGATTCGAGTCACAATGGACCGTTTTTTCTTGGAAGGTTTATGGAATCTTTGCATTACTACTCTGCAATATTTGATTCGCTTGATGCAATGTTGCCCAAGTATGATACGAAGAGAGCGAAGATGGAGCAGTTTTACTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGGCCGCTTCGGATGGAGCGGCACGAGAGGGTGGACCAGTGGCGGAGGAGGATGAGCCGGGCGGGGTTCCAGGGTTCGCCGATTAAGATGGTGGCGCAGGCAAAGCAGTGGCTTGTGAAGAACAAGGTTTGTGATGGATATACTGTTGTGGAAGAGAAAGGGTGCTTGGTTCTTGGTTGGAAATCAAAGCCTATTGTTGCAGCTTCTTGTTGGAAGTGTTGA 1533 0.4768 MVQDPSCIIFYSCPNLSDLDDTTTPFYTVKDRFSPEEKRILENTFIHWSHTISSSLDEISQTKRLRRTTSIPISLENLSINPIYGSNYNKNSIQTHIRDHIKSCSQMYRAAEAVEEAAQDMINSEGGGEDGCDGMRLVQLLISCAEAVACRDKSHASILLSELKSSALVFGTAFQRVASCYVQGLSERLSLIQPCFGPVAVAQPMMNIMDAASEKMEEAFRLVYEICPHIRFGHFVANSAIVEAFEGESLVHVVDLGMSLGLSHGHQWRGLIQSLANRSGACVRRLRITAVGLCIGRFRIIGDELSVYANSMGINFEFSVVQKNLENLKPEDVIKEDNEVLVVNSILQLHCVVKESRGALNSVLQMIHGLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQGSPIKMVAQAKQWLVKNKVCDGYTVVEEKGCLVLGWKSKPIVAASCWKC* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2060 510 ProSiteProfiles GRAS family profile. 128 509 IPR005202 -
Amo01g2060 510 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 87 509 IPR005202 -
Amo01g2060 510 PANTHER DELLA PROTEIN RGL1-LIKE 87 509 - -
Amo01g2060 510 Pfam GRAS domain family 137 509 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2060 Amo-Chr1 59766136 59767668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2060 134 509 GRAS Transcription Factor Family AT1G66350 38.158 4.82e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo01g2060 GRAS 5.4e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2060 - - adu:107491113 1025.39