Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2050 ATGAAGAAGCTCACTGCAATTGTTTCCATTTTCGTGATCTTAACATTCTCTTTTCATGAAATTGCGTATGTTTCTTCATCTCCTCTCTTACACCACGCAAAACAGGTTCACGAAGAGAAATCTTCTACTTACTTGACACCGTTTGTTGAGCGAGAAAACTATCATTTTTCAAGAAACTGTAGACTTCACCCTGAAAATGATATATTCAGGGATCAGGAGGAGCATAAAATTTTCGTAGACAGGCATGATTGGCGGTGTGGATATTGTAGAAAAGTTTTCCGTGAAGAAAAATTTCTTGATCAGCATTTTGATAACAGGCACTCCAATCTTCTGAATGTAGAATGGTTTGGGTTTGGGAAAGAAGGGATGAAGGCAGAGAGAGGAGAGAGTGGCAGTAGTGGCAGCAGGAGGAGAGGTTATGGAGGCTATAGTCATGATAATTGCTTGGCTGATTTATGTGGAGCATTGCATTGTGATGCTGTTATGAATTCCAAGTTCTCTAGAACTAAGTGTTATCCAGCAGCTGCTGCAAAAAACCGTCACCTATGTGAGAGTCTTGCTGACAGTTGCTTTTCCATAAGCCAGGGGCCATCAGCAAGCTGTCTTCATGAATTGTTTATACACCAGTTTTGTGATGCTCACACCTGCTCAGGGAAACAGAAGCCCTTCTCTAGAGGAGGCAAGGAGCAAAGTAGTTTCTTCCGCCTGGCTGCTGGAGCATTGATCTTGGTGCTACTTCCTGTTGATATGAAGGGTCGAACTCAGGAGCTTCGTCGCATCTCAAAAGCAGGATGGAAAGTCAAACCATCATGA 813 0.428 MKKLTAIVSIFVILTFSFHEIAYVSSSPLLHHAKQVHEEKSSTYLTPFVERENYHFSRNCRLHPENDIFRDQEEHKIFVDRHDWRCGYCRKVFREEKFLDQHFDNRHSNLLNVEWFGFGKEGMKAERGESGSSGSRRRGYGGYSHDNCLADLCGALHCDAVMNSKFSRTKCYPAAAAKNRHLCESLADSCFSISQGPSASCLHELFIHQFCDAHTCSGKQKPFSRGGKEQSSFFRLAAGALILVLLPVDMKGRTQELRRISKAGWKVKPS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2050 270 ProSitePatterns Zinc finger C2H2 type domain signature. 86 107 IPR013087 -
Amo01g2050 270 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 144 270 - -
Amo01g2050 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 109 IPR013087 -
Amo01g2050 270 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 43 114 - -
Amo01g2050 270 PANTHER ZINC FINGER PROTEIN-RELATED 144 270 - -
Amo01g2050 270 PANTHER ZINC FINGER PROTEIN-RELATED 43 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2050 Amo-Chr1 59299706 59302974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2050 19 270 C2H2 Transcription Factor Family AT5G63280 48.302 2.60e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2050 - - ccaj:109814494 347.821