Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2047 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTGCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTCAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTMGTGATGAGGGTTTTAAAGGTGGTGGTGWTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGACGGGTTAGTTAATGAATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGTTGAGAATAGGGAAGAGAAAAGTGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCAATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGCGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGACCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGGGAAAGAGAGAATGTCCTTATTACATGCGCACCGGCTCGTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGAATGGAGGATCTGATCCTTCTTCACGGTATAGTAATGGACGATCTAATACTTCTTCAGGGTATAGTAATGGAGGATCTATTTCATTACGTGGTGTATCGCAGCAGTCTGTCTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCACCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAAWTTGATGARTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCCTGCATGCATTACACACGATACGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCATCCGATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1566 0.4521 MEHTESDSASSSLPNGGGDCITATQQDPQLAPSSNHGTDDPQPSDLYQTAQDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGXDEGFKGGGXDGDNWGWETNSWEEENVNVGLVDGDYDGLVNEYVDADGGDDVDGVENREEKSGGGRAQHQYPWRPDAQDCAFYMKTGNCKFGINCKFNHPINRRKNQAVKERPAEREEEQAERPGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLGKRECPYYMRTGSCKFGANCKFNHPDPTTVGGSESSPGNGGSDPSSRYSNGRSNTSSGYSNGGSISLRGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQXDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ* 522
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2047 521 SUPERFAMILY CCCH zinc finger 475 502 IPR036855 GO:0046872
Amo01g2047 521 Gene3D - 220 308 - -
Amo01g2047 521 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Amo01g2047 521 PANTHER PROTEIN PHOSPHATASE RELATED 25 504 - -
Amo01g2047 521 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Amo01g2047 521 SUPERFAMILY CCCH zinc finger 278 304 IPR036855 GO:0046872
Amo01g2047 521 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Amo01g2047 521 Gene3D - 158 219 - -
Amo01g2047 521 SUPERFAMILY CCCH zinc finger 432 457 IPR036855 GO:0046872
Amo01g2047 521 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 25 504 - -
Amo01g2047 521 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Amo01g2047 521 MobiDBLite consensus disorder prediction 304 370 - -
Amo01g2047 521 MobiDBLite consensus disorder prediction 7 58 - -
Amo01g2047 521 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Amo01g2047 521 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Amo01g2047 521 SMART c3hfinal6 427 454 IPR000571 GO:0046872
Amo01g2047 521 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Amo01g2047 521 SMART c3hfinal6 474 500 IPR000571 GO:0046872
Amo01g2047 521 MobiDBLite consensus disorder prediction 303 370 - -
Amo01g2047 521 MobiDBLite consensus disorder prediction 149 177 - -
Amo01g2047 521 ProSiteProfiles Zinc finger C3H1-type profile. 473 501 IPR000571 GO:0046872
Amo01g2047 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 476 499 IPR000571 GO:0046872
Amo01g2047 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 303 IPR000571 GO:0046872
Amo01g2047 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 454 IPR000571 GO:0046872
Amo01g2047 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 255 IPR000571 GO:0046872
Amo01g2047 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Amo01g2047 521 Gene3D - 426 506 - -
Amo01g2047 521 ProSiteProfiles Zinc finger C3H1-type profile. 427 455 IPR000571 GO:0046872
Amo01g2047 521 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Amo01g2047 521 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo01g2047 Amo-Chr1 59179376 59183381 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2047 142 504 C3H Transcription Factor Family AT1G04990 34.054 8.49e-63 209
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g2047 zf-CCCH 1.1e-06 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2047 - - adu:107491206 896.345