Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2041 ATGGGAAATCTGCAAACAAAATGGGCAGCGAGTACAGTCCAACCCGCTGAGTCCAATTCAGCTTCTTCTTCTTCTTCTTTGTTTACCAATGGTAGTGGTCAACAACAACCACCACAGCCTCCACGGGCTCCTCTTTCTTCTCCTTCTGATCACCATCAAACGTCCCAGGAAGGTGCCCTCTGCGGGGACCTTAAGGGCAAACTAGAATTGAAGGGTGAAGGGCGAGTGGGTGTTGAAGCTCTGGATCAAGTTTTAAACTTTGGTCAACAGGGTGTTAATGGTGATGATCGGGATATTGAGGGCTCGAAGAGGAATAGTTGGGAAGATGATTATGTGAATGGAAGTGTTTATGATGGCAACTGCGTTGGAGCTGAGAAGAGAAAAAAGAGAGGCGCTGGTCGGCAAACGAAGGTTGCTAAGGAGCAGTCACAAGAAAGACAAGAACCATCAGAAAGATCCGGCCAAACAGAATGCAAGTATTATCCATCACTACCAGCTGCAGAACTGAACTTTCTTGACCTGCCTATCCGTCCGGGAGAGAAAGATTGTGCCTATTACATGCAACATGGGTCATGTAAGTTTGGAGAAAACTGCAAGTATAATCATCCTGACCCGACAACTGGAGGATGCGATCCTCCTCCTATGTATGATAATGTAGGATCTATTTCATTCAGTGGTGTACTGCAACAGTCTGCATCATCAGTCTCTTCTCCAGGAATAGTAAACAAAACTTCTCCTTTTCTGCCAATGATGCTTTCGCCTACTCAAGTTTCTCCTCAAGATTCCGATTGGAATGCATATCATTATCAGGCACCTATATGCCCATGTGTGATGAGTATGCATCCACCTACACATGTCAAGAGCTACCCAGCTATCGAAACAAACGCTTATACGCCCCAACAAAATCAGATCCAAGTTGGAGTTGATGAGTTTGCAGAAATACCTGGGGATTCTAAGCCTAAATCCAAACGTAAATCTCGCTGTAAGAAGAATAAACTTGCAAGTTTACCTCCATGCAATCTCAATGGCAAGGGCCTACTTTTGAGACCGGCACCGATCTGCCCATCTACGATGAGTATGCATCCACCTAAATATGTCATGAACAACTCAACAATCAAAACAAATGCTTATACGCCCCGACAAAAGCAGATCCAAGACGGAGTTGATGAGTTTGCAAAAATACCTGAAGATTCTAAGTCTAAATCCAAAGGTAAATCTCGCCGTCAGAAGAATAAGCTTGCAAATTTACCTCCAAGCACTCTCAATGACAAGGGCCTGCTTTTGAGACCTGCACCTATCAAGCCATCTGTGATGGGTATGCATCCACCTACACATGTCATGAATAACCCAGCAATCAAAACAAAAGCTTCTACGCCCCGACAAAAGCAGATGCAAGTTGGAGTTGATGAGCTTGCAGAAATACCTGGGGATTCCAAGTCTAAATCCAAACGTAAATCTCACCGTCAGAAGAATAAGCTTGCAAGTGTACCTCCATGCACTCTCAATGACAAGGGCCTGCCTCTGAAACCTGACAAGAGTGCATGCCCCGAATACATTTGCCTCGGAATATGCAAGTTTGGAGCATGTTGTAAGTTTGACCACCCATCAAACCCTCCACCGTCGTTGACAATCCATTCAGTTTATCAGCAATCCTACACAAACTCAGCTGGTGTTGAGGTGGCTTGGATGGGTTCAAGTGATCCCACAATTCAGCAAACTCTGTAA 1725 0.4487 MGNLQTKWAASTVQPAESNSASSSSSLFTNGSGQQQPPQPPRAPLSSPSDHHQTSQEGALCGDLKGKLELKGEGRVGVEALDQVLNFGQQGVNGDDRDIEGSKRNSWEDDYVNGSVYDGNCVGAEKRKKRGAGRQTKVAKEQSQERQEPSERSGQTECKYYPSLPAAELNFLDLPIRPGEKDCAYYMQHGSCKFGENCKYNHPDPTTGGCDPPPMYDNVGSISFSGVLQQSASSVSSPGIVNKTSPFLPMMLSPTQVSPQDSDWNAYHYQAPICPCVMSMHPPTHVKSYPAIETNAYTPQQNQIQVGVDEFAEIPGDSKPKSKRKSRCKKNKLASLPPCNLNGKGLLLRPAPICPSTMSMHPPKYVMNNSTIKTNAYTPRQKQIQDGVDEFAKIPEDSKSKSKGKSRRQKNKLANLPPSTLNDKGLLLRPAPIKPSVMGMHPPTHVMNNPAIKTKASTPRQKQMQVGVDELAEIPGDSKSKSKRKSHRQKNKLASVPPCTLNDKGLPLKPDKSACPEYICLGICKFGACCKFDHPSNPPPSLTIHSVYQQSYTNSAGVEVAWMGSSDPTIQQTL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2041 574 MobiDBLite consensus disorder prediction 127 157 - -
Amo01g2041 574 PANTHER PROTEIN PHOSPHATASE RELATED 164 351 - -
Amo01g2041 574 PANTHER PROTEIN PHOSPHATASE RELATED 439 573 - -
Amo01g2041 574 PANTHER PROTEIN PHOSPHATASE RELATED 356 431 - -
Amo01g2041 574 SUPERFAMILY CCCH zinc finger 180 205 IPR036855 GO:0046872
Amo01g2041 574 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Amo01g2041 574 SMART c3hfinal6 510 536 IPR000571 GO:0046872
Amo01g2041 574 MobiDBLite consensus disorder prediction 313 334 - -
Amo01g2041 574 Gene3D - 136 208 - -
Amo01g2041 574 MobiDBLite consensus disorder prediction 86 109 - -
Amo01g2041 574 MobiDBLite consensus disorder prediction 127 153 - -
Amo01g2041 574 MobiDBLite consensus disorder prediction 392 427 - -
Amo01g2041 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 164 351 - -
Amo01g2041 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 439 573 - -
Amo01g2041 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 356 431 - -
Amo01g2041 574 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Amo01g2041 574 MobiDBLite consensus disorder prediction 472 500 - -
Amo01g2041 574 MobiDBLite consensus disorder prediction 1 36 - -
Amo01g2041 574 MobiDBLite consensus disorder prediction 1 63 - -
Amo01g2041 574 ProSiteProfiles Zinc finger C3H1-type profile. 509 537 IPR000571 GO:0046872
Amo01g2041 574 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2041 Amo-Chr1 58842541 58847515 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2041 476 538 C2H2 Transcription Factor Family AT5G18550 38.462 2.18e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g2041 zf-CCCH 3.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2041 - - adu:107489296 1098.19