Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2040 ATGGCATCTGGCGAGGGGTTTCTTACGGATGGACAGAGGGAGATTCTCAAGATCGCTAGTCAGAACGCAGAAAATCTGTCGTCGTCGCCGAAATCGCCATCGTCGCTGCTTTCATCTGAGCATCATCATGTTAAGGCTCCTGCTGGCGGCGGAAAGGCTCAAACCGCTGGGATTGCTGTGAGACACGTTCGTCGGTCTCACTCCGGGAAGTTAGTGAGAGTGAAGAAAGATGGTGCTGGTGGTAAGGGTACTTGGGGGAAATTGCTTGATACTGAAGGTGAAGCTCACCTAGATCGTAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGTTAGTTGGATCTACAGTGATGGACCCCTTGGATGATTTCAAGAAAGCCGTGGTATCTATCATAGAGGAATATTTCAGTACTGGGGATGTGGATGTGGCTGCGTCTGACCTCAAAGAACTTGGATCTAGTGAATATTATCCATATTTTATCAAGCGCCTTGTGTCGGTGGCCATGGACAGGCATGATAAGGAGAAAGAAATGGCGTCTGTTCTGCTCTCAGCATTGTATGCTGATGTCATCAGCCCTGCACAGATCAGGGATGGATTTTTTATGCTTATTGAATCTGCCGATGATCTTGCTGTGGACATACTGGATGCAGTTGATATCCTTGCTTTATTCCTGGCACGGGCTGTTGTTGATGACATTCTTCCTCCAGCTTTCCTAGCTAGGGCAAGGAAGGCTCTTCCAGAGCCTTCCAAGGGTGCTCTGGTAGTCCAGACTGCTGAGAAGAGTTATCTCTCTGCTCCCCACCATGCGGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACCGTTGAAGAAGTGAAGAAGAAGATTGCCGATTTGTTAAGGGAATATGTGGAGAGTGGTGACACATTTGAAGCCTGTAGGTGCATACGTGAGTTAGGGGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTAGTACTTGCCATGGAGAACCGTTCAGCAGAACCACTGATGTTGAAACTACTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGTCAAATGGTCAAAGGATTTTCTCGATTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTCTGTCATTTGTTCCCAAGGCAATATCTGAAGGGTGGCTTGATGCATCATTTGTGAATCCTAATGGTGACAATGGAGAAATTCAAGTTGAAGATGAGAAGATGCGGAAGTACAAAAAGGAAGCTGTAACCATAATTCACGAGTATTTTCTGTCTGATGATATTCCTGAACTGATTCGGAGTCTTGAAGATCTTGGTGCACCCGAGTATAACGCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGATAGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCTCTACATATAGAAATTTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTTGAAAGTGCAGAAGATACGGCACTAGATATATTGGATGCTTCAAATGAACTTGCTCTGTTCTTGGCTCGGGCTGTGATAGATGATGTATTGGCCCCTCTGAATTTGGAAGAAATCGCCATTAGGTTACCCCCAAAGTGCAGTGGGACCGAGACGGTGCGAATGGCACGCACACTCATAGCAGCTCGTCATGCTGGTGAGAGGCTGTTGAGATGTTGGGGTGGTGGGACCGGATGGGCAGTTGAGGATGCCAAGGACAAGATCATGAAACTCTTGGAGGAGTATGAAAGCGGCGGGGTTGTGAGCGAAGCTTGCCAGTGTATCCGGGACCTTGGAATGCCCTTCTTCAACCATGAGGTAGTTAAGAAAGCTTTGGTCATGGCCATGGAGAAGAAGAATGATAGGATGCTTGATCTGCTGCAGGAGGGATTCAGTGAGGGTTTGATCACCATCAATCAGATGACGAAAGGGTTCACCCGGATCAAGGACAGTCTTGATGATCTTGCTCTGGACATTCCAAATGCAAAGGAGAAGTTTGGGTTCTATGTGCAGCATGCCCAGACCAAGGGTTGGCTTCTACCGTCATTTGATTCCTGTGCCACAGAGGTTTAG 2118 0.4655 MASGEGFLTDGQREILKIASQNAENLSSSPKSPSSLLSSEHHHVKAPAGGGKAQTAGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTEGEAHLDRNDPNYDSGEEPYQLVGSTVMDPLDDFKKAVVSIIEEYFSTGDVDVAASDLKELGSSEYYPYFIKRLVSVAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPEPSKGALVVQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDTFEACRCIRELGVSFFHHEVVKRALVLAMENRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFLSFVPKAISEGWLDASFVNPNGDNGEIQVEDEKMRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNAIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIAIRLPPKCSGTETVRMARTLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQEGFSEGLITINQMTKGFTRIKDSLDDLALDIPNAKEKFGFYVQHAQTKGWLLPSFDSCATEV* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2040 705 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Amo01g2040 705 MobiDBLite consensus disorder prediction 1 57 - -
Amo01g2040 705 PANTHER PROGRAMMED CELL DEATH 4 1 697 IPR039778 GO:0045892
Amo01g2040 705 SUPERFAMILY ARM repeat 123 282 IPR016024 -
Amo01g2040 705 ProSiteProfiles MI domain profile. 124 245 IPR003891 -
Amo01g2040 705 ProSiteProfiles MI domain profile. 288 409 IPR003891 -
Amo01g2040 705 SUPERFAMILY ARM repeat 285 405 IPR016024 -
Amo01g2040 705 SMART ma3_7 423 534 IPR003891 -
Amo01g2040 705 SMART ma3_7 586 695 IPR003891 -
Amo01g2040 705 SMART ma3_7 125 236 IPR003891 -
Amo01g2040 705 SMART ma3_7 289 400 IPR003891 -
Amo01g2040 705 SUPERFAMILY ARM repeat 421 579 IPR016024 -
Amo01g2040 705 MobiDBLite consensus disorder prediction 15 39 - -
Amo01g2040 705 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 697 - -
Amo01g2040 705 Gene3D - 117 263 - -
Amo01g2040 705 Gene3D - 411 565 - -
Amo01g2040 705 SUPERFAMILY ARM repeat 582 698 IPR016024 -
Amo01g2040 705 Gene3D - 573 703 - -
Amo01g2040 705 Gene3D - 275 406 - -
Amo01g2040 705 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Amo01g2040 705 Pfam MA3 domain 587 694 IPR003891 -
Amo01g2040 705 Pfam MA3 domain 125 236 IPR003891 -
Amo01g2040 705 Pfam MA3 domain 424 533 IPR003891 -
Amo01g2040 705 Pfam MA3 domain 289 400 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2040 Amo-Chr1 58701512 58706298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2040 589 685 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 1.38e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2040 - - gmx:100815729 1211.82