LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g2038	ATGGATGGTAGAAGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGGGTGAGGTCACTGAGGGATCCATCAACTAACTGCATTAACAAGCTCTCTCCTTTGATTGACAATGTTCAATGGGAAAACGGTTCCAACAATGGCATTTCGCTGCACTTCCTCGAAGCTTCTCATGCATGCGGTTCTAGTGATAACAATGATGGTTTTAGATCAAAGACTTTAGAATTCAAGGGACATAGAGAGCAGGATACTGCTGATTTTGAGCTGAATTGTGGCCTTTTGAACTCTAAGAGGAACTATCATGGGATATCCTGCCAGGAAACAAAGCGAGACGACGAGCTAGTTTATTCTAATGCTTATCAGCAAGGCATTGTTGGGAATAAATCACCGAGTGAAAGCTGTAGCAGCAACTATGGAGGTAGAGGGTTGGATCTGGCTGGCATGGTGCCGTCTGTTAATCATTTGAGGGACGGGGAATTGTGCTATTTATCTTCGCAGTTAGGGAGGGTAGATAACTTGAAGCAAACCCGAAAGTCGCAGCGCAGGACTACAAAAGTTAAACCATCTGAAGCGACAGGTGATACTGTGAGCCATGTAGGTAGTCCACACCTTTCTTTTGGTGATGCTCTCTCAGCTCATAGTGCTTCAGTACGAATAACTCAAGATGCTTTGGATAATCTACATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCAAATCATTATTCTGAAGTAGAAGATCTTCCTTTGTTATTGCAGCAAGCTAATGAGACTGATCTTTATGGATGCAGAAGCACAAGAAACGTAGGTGGCGGAGATAGTCCAAATTTGGAAACTCCAAGAAGTTTATCAATGAAATTTAAGCCAAAATCTTTTGGTGATTTGGTGGGGCAAAATGTGGTTGGAAGGTCACTTATGGGGGCCATTTCCAGTGGAAGGATAACATCATTTTACCTTTTCCATGGTCCCCGTGGTACCGGAAAGACATCTGCGTCTAGGATATTTTCTGCGGCATTAAATTGCCTATCCCTTGAGGTGCAAAGGCCATGTGGTATGTGTAAAGAGTGTATTTCGCTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCCTTGAGAATCAACCATGTAGACAAGGTTAAGTCCCTAATTAAGAGTGCTTGTATTCCTCCGGTTTCGTCACGCTTTAAGGTGTACATTATCGATGAGTGCCAGTTCTTGAACGGGGAAACATGGGCTACTCTTTTGAATAGCCTAGATAATGTTTCTCAATATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGAAGTGTGGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGATTAAAGATGTTGATATCGCGAGCAGATTAGAAAAAATCTGTGTTGAAGAAGGTCTTGATTTTGAACAAGTTGCTTTGGATTTTATTGCTGCTAAATCTTGTGGTTCTCTTAGAGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACACTTACCTTAGCCCATGAGCTCACTGGTGTCGTTTCAGATGATGAATTGCTTGACTTGTTGGACCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGCTGATGAGATCGCGGATAGATCCATTACAACTTGTTTCACAGCTTGCAAATCTTATTATGGACATTCTTGCAGGGAAGTCTGAAGTCGGTGATTCCGAAATCAGAAGAAGATTCTTGATTAGACAAACCTCTGAAGCAGACATGCAGAAATTGAGTCATGCGTTAAAAGTACTTTCAGAAACAGAGAAGCAATTGAGAATTTCAAAGAATCAAAGAACATGGTTCACAGCAGCGCTTCTACAATTAAGTGCCGAAGAATATCCACCTGCTGATGCAACTGATGACAAGTTGTATTTGAAAGGTGCTACCAATAGAGATGGTGATTTCTGTAGTACTTCATCAACAGGGGAGAGCTTGAAGAATATTGCTACAGGTCAATGTGATGAAAAGTCATATAGATTAGGATTGCAAGAGGATCAGAAAAGAACTTTGGATTCCATATGGTATAAAGCTACAGAGATATGCCAATCAAGCCGGCTCAAGGCTTTTCTCAGGAAGCAGGGAAAGTTATCTTCGCTTTGTGTCAATCAAGGCCTTGCAGCTGCTGAGTTGGAATTCCACCGTCGTGACAGTGTAGCTAGAGCCGAGAAGTCGTGGAAACTGATTGCAAGTTACCTGCAGATCATATTGGGTTGCAACATTGAGCTCAGGATCAATTACGTACCTTGTGCCACAGCTTCTAGGTATGCCAGACTAAAGAGGTCATCTTTCAATTTCTTTAATTGTTCCCGAAGAATTCTACGGAAATCGATGCCTTCTGACGACCAAGGAAGCGAATCAGACTATGCTGATCAAACTTCTGAGAAGCCTATGATGAAAGATCAGACTCTAACTTGTTCCTCTGAGTTTGGTTCTCGGGTGCCACTACCTGATGTTGTAGCAGCTTTGAGAAGTTGCGAAGGTAATCTGCTAAGCTCGGGGAAAACATTCTTGAATATGTCTACTCAAGAGACTCCAAGGAATTCATGTTCTAGAGCTGATTCTCTTAAGGAAGAGGAATGCAATCAGGCCCATTTACCTTCGTCAAACATCGATTTAGACTATCAATCTAAGTGTTTTCCTCGAACCTTCTGGCTTCATAAGAAATTCTGTTCATCGCATGCATCGGAACAGAAGGATTTTGTTTTCTCAAGCCACTATGTTTATCCCCCACAACTCTAA	2829	0.4185	MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCINKLSPLIDNVQWENGSNNGISLHFLEASHACGSSDNNDGFRSKTLEFKGHREQDTADFELNCGLLNSKRNYHGISCQETKRDDELVYSNAYQQGIVGNKSPSESCSSNYGGRGLDLAGMVPSVNHLRDGELCYLSSQLGRVDNLKQTRKSQRRTTKVKPSEATGDTVSHVGSPHLSFGDALSAHSASVRITQDALDNLHGCGISCCWSKSPRFRESNHYSEVEDLPLLLQQANETDLYGCRSTRNVGGGDSPNLETPRSLSMKFKPKSFGDLVGQNVVGRSLMGAISSGRITSFYLFHGPRGTGKTSASRIFSAALNCLSLEVQRPCGMCKECISLFSGRSKDVKEVDSLRINHVDKVKSLIKSACIPPVSSRFKVYIIDECQFLNGETWATLLNSLDNVSQYVVFVMITPDLDNLPRSVVSRAQRYHFPKIKDVDIASRLEKICVEEGLDFEQVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITLTLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKSEVGDSEIRRRFLIRQTSEADMQKLSHALKVLSETEKQLRISKNQRTWFTAALLQLSAEEYPPADATDDKLYLKGATNRDGDFCSTSSTGESLKNIATGQCDEKSYRLGLQEDQKRTLDSIWYKATEICQSSRLKAFLRKQGKLSSLCVNQGLAAAELEFHRRDSVARAEKSWKLIASYLQIILGCNIELRINYVPCATASRYARLKRSSFNFFNCSRRILRKSMPSDDQGSESDYADQTSEKPMMKDQTLTCSSEFGSRVPLPDVVAALRSCEGNLLSSGKTFLNMSTQETPRNSCSRADSLKEEECNQAHLPSSNIDLDYQSKCFPRTFWLHKKFCSSHASEQKDFVFSSHYVYPPQL*	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g2038	942	CDD	HLD_clamp_pol_III_gamma_tau	465	528	IPR045085	-
	Amo01g2038	942	TIGRFAM	dnaX_nterm: DNA polymerase III, subunit gamma and tau	292	638	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Amo01g2038	942	Gene3D	-	467	528	-	-
	Amo01g2038	942	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	318	514	IPR027417	-
	Amo01g2038	942	SUPERFAMILY	post-AAA+ oligomerization domain-like	535	637	IPR008921	GO:0003677\|GO:0006260
	Amo01g2038	942	Gene3D	-	529	641	-	-
	Amo01g2038	942	PANTHER	DNA POLYMERASE III SUBUNIT GAMMA/TAU	109	906	-	-
	Amo01g2038	942	Gene3D	-	286	463	IPR027417	-
	Amo01g2038	942	MobiDBLite	consensus disorder prediction	806	827	-	-
	Amo01g2038	942	MobiDBLite	consensus disorder prediction	812	827	-	-
	Amo01g2038	942	CDD	AAA	328	456	-	-
	Amo01g2038	942	MobiDBLite	consensus disorder prediction	178	204	-	-
	Amo01g2038	942	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	109	906	-	-
	Amo01g2038	942	MobiDBLite	consensus disorder prediction	178	192	-	-
	Amo01g2038	942	Pfam	DNA polymerase III, delta subunit	308	465	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g2038	Amo-Chr1	58660311	58663803	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g2038	284	621	Core DNA Replication Machinery Family	AT1G21690	25.882	1.70e-14	73.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g2038	-		-	pvu:PHAVU_003G207500g	1224.92