Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2032 ATGATGCAGCCCGGACCTGGCATGGCTCCTCCACCCAYCATGGCCCAGCAGCCCAACCAGCAGTACCAGCAGCAGCAGCCATACATGATGATGCCTCCGCAGGCCCAGCCACCACAGATGTGGGCCCCCTCTCCTCAGGCTCCGACACAGTCCGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGTGCCGATGAGGTCCGAACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTACCTCTACACCTGTTTTGCTCACACTGGCGAGATGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAAACATTCAATGGRACCATTATGCCAAATGGCGGGCAGAATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGTGAGAGGCGTCATGACGARAGTCCAGATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTTCAGGAGACATTTAGGGGTAGATACTCCTCGGTTAAGGGGGCTAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTACGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAGTTAGAGCTATGACYGAAATGCAGGGCGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCATCTAATAAAAACCCAACCACACAATCCAACAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATGCAAATGTTACAGATGATCACCTGCGACAAGTCTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCCGGCAAGAGATGTGGATTTGTGCAATTTGCCGACAGGAGTTGTGCTGAAGAGGCAACTGGAAGTTTTGAATGGACACTTTTAGGTGGCCAAAATGTTAGGCTTTCATGGGGACGGAGTCCTTCAAACAAACAGGCTAATGAAAATTATGGTTATGCTCTCCGCCGGGACAAGGACCCCAACATGTATGGAAGCTATCCAGGGTATGCAAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1152 0.4818 MMQPGPGMAPPPXMAQQPNQQYQQQQPYMMMPPQAQPPQMWAPSPQAPTQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMASVKVIRNKQTSQSEGYGFIEFTSRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDESPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPTTQSNKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFGHYGELVHVKIPSGKRCGFVQFADRSCAEEATGSFEWTLLGGQNVRLSWGRSPSNKQANENYGYALRRDKDPNMYGSYPGYANYQPPQQQQQQMGYS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2032 383 MobiDBLite consensus disorder prediction 368 383 - -
Amo01g2032 383 CDD RRM2_SECp43_like 159 238 - -
Amo01g2032 383 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 379 - -
Amo01g2032 383 SUPERFAMILY RNA-binding domain, RBD 147 251 IPR035979 GO:0003676
Amo01g2032 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Amo01g2032 383 MobiDBLite consensus disorder prediction 234 270 - -
Amo01g2032 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Amo01g2032 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 328 IPR000504 GO:0003723
Amo01g2032 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Amo01g2032 383 Gene3D - 246 348 IPR012677 -
Amo01g2032 383 MobiDBLite consensus disorder prediction 1 60 - -
Amo01g2032 383 Gene3D - 10 151 IPR012677 -
Amo01g2032 383 MobiDBLite consensus disorder prediction 336 383 - -
Amo01g2032 383 MobiDBLite consensus disorder prediction 31 55 - -
Amo01g2032 383 MobiDBLite consensus disorder prediction 14 30 - -
Amo01g2032 383 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 379 - -
Amo01g2032 383 SUPERFAMILY RNA-binding domain, RBD 28 148 IPR035979 GO:0003676
Amo01g2032 383 SMART rrm1_1 68 143 IPR000504 GO:0003723
Amo01g2032 383 SMART rrm1_1 161 235 IPR000504 GO:0003723
Amo01g2032 383 SMART rrm1_1 267 334 IPR000504 GO:0003723
Amo01g2032 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Amo01g2032 383 CDD RRM1_SECp43_like 68 148 - -
Amo01g2032 383 Gene3D - 152 245 IPR012677 -
Amo01g2032 383 MobiDBLite consensus disorder prediction 229 270 - -
Amo01g2032 383 SUPERFAMILY RNA-binding domain, RBD 252 354 IPR035979 GO:0003676
Amo01g2032 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2032 Amo-Chr1 58161160 58164690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2032 161 331 Eukaryotic Initiation Factors Gene Family AT4G34110 30.114 1.80e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2032 - - gmx:100814743 570.466