Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2025 ATGGCGGATGATGACGTGAACTTTTCGGAACTGTTCGATGGTGACGATGACGATAATATGTGCTATATCGATTTAACGACGGTGATGCAGGTTCTCAATGAGGATGACGACCCTCTGCAGCAGAGTAGTCCTGAAGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATTCTTTTCAGCTTCAGAATGTTTGTCAAATGTTAGAAGAAGAACCACATGTTTCTAGGTTGGAGGTGGATTCAGCCACAGACTGCTCTCCTTTCTGCTCAGATGTGTCGGATTCTGGGGCCAAAGATTCAGTTCATTTTTCAGCGAATCCTGTGCTTGAGCGTGAACATGAAAATCAGGGACTTCCAAGTCAGGCTTGCTCTTCCACGGAAAAGACAGGGCTTTCTAAATTTGAGACATCTAGTTTTGGTATGGAAACTAGTTTCCCTGAGGCATATTCAAATAATGTATCAGTCTGTCAGGACTATTTGAATAAGAGTATGTGGAAGAGTGGAAATGAGAGGCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCTCACAGTTCTATCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAGGATGCTGTTCGAGGTGCTTATGGGCAACAAGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGAAGCTGATGATTCTTTGCATGCTTCAACTTCAATTGATTCTGCTCTTTATCAAGGTTCCCATTTTCCTAGCGATTTGTGTGGTGACTATGCATATCCAAATTATCATCAGGGAGGAACATATGATAGATCGTTTGCCAATGACCCAACTTTAAGGTTTATCCCTAATGGTATCGGTTCCAAGTCATGGACAAATAAAGAAATGATGACTAACCTGAAGGCTGAAAATATGGAGTTCTGTACAGATATGGCCCAAATCAGTGGTGGCATGCACTCAGTTAATACTGGGGGATCATCTATTCATGATAGTCAATTTACGCTAGCAGATAGTGGCTATTCATCATATTTTTCTGGTAACAGTGCTTTTGAAGATGGGGTGTCAGTTGCACTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAGGGGACAAACTGGTTACAAGTTACCAAAATAATTTTCAGAACAATGATTCTCAGTTCAATATTGGCCAGGAGGTGAAACAGTTACCAGATCTTTTTCCTTCTGTGAAATGTAAGAGTTATGGATCTTTCCCATGTGAGGATAGTTATACAGTAATAACTTCTGATAGAGCCAATCATTATCAAGATACTATTAATGGAACTGCTAGTAAACTTCAAAGAAACATGGTCTATTTGACTGTAGACCAATGTTTGCCCCATGCCCATGCTTCCATTGCCGTTGAGCAGCAGTTTGGTTGTGTTAAGAGAGGAGGGACCGAAATGATTCAACATAACCGCATTGATTCTCATCATTCTAAACGAACTGCTGAGAATTTCCGTGTTGAGGACACTGATGTTTGTATCATTGAAGACAACAGTCATCCTGTGCCTACAAGTCAATCTGAAGCTGTTCGTAATTCCCTTAGTATATTTCAATCTTCCGGATATGTTGGTTCCCAACATTACGCGGTTGGAAGCACAAGGGTAAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAAATTAGTCTGCCAGTTGGATTGTTGGCGGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATACTTGCAGATGATCAGGGACTTGGGAAAACGGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTATCTGCATGCCCCAATGCCCAAAATGGTGAATTGGAAACTTTGAATCTGGATGGAGAGGATGATGGTCTTCCTCAGAGCAGTTTGTTAAAGAAGGAATCTGATTCATGCGGAGACATGTCAATTAGAGATCCAATCAAGAGCAAGAGTTTATCTTTGCAAACAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTCTGCCCCACTAGCGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCGCTAGCTGACAAAGAAGATGAAGAGAAGGGAATATTTGAAGATTCTGGGGTACCAAATAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAACGCATTGCTTGAGGCTGCTGCTCGACCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTCGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGGATGTTTGCTCGTCTTCCATCGAATCACTTGAACGATTGGGTGGCGGAGACAAGACGACACCACACTACTCTTGCTCGATCCCAACTCCAACCTTTGAAATATTTTTTTTTGTATCGAAGTTAGTAAAAGTTTTAAAAATATCTTTAAATTTTATT 2697 0.4127 MADDDVNFSELFDGDDDDNMCYIDLTTVMQVLNEDDDPLQQSSPEDFSLQNGSSGESGVHDSFQLQNVCQMLEEEPHVSRLEVDSATDCSPFCSDVSDSGAKDSVHFSANPVLEREHENQGLPSQACSSTEKTGLSKFETSSFGMETSFPEAYSNNVSVCQDYLNKSMWKSGNERQFKHVGEDVESEHASHSSIIENGDLNFEDCVEDAVRGAYGQQESDLCTSFQISDMEADDSLHASTSIDSALYQGSHFPSDLCGDYAYPNYHQGGTYDRSFANDPTLRFIPNGIGSKSWTNKEMMTNLKAENMEFCTDMAQISGGMHSVNTGGSSIHDSQFTLADSGYSSYFSGNSAFEDGVSVALSTYASHGDQSLCMKAEGDKLVTSYQNNFQNNDSQFNIGQEVKQLPDLFPSVKCKSYGSFPCEDSYTVITSDRANHYQDTINGTASKLQRNMVYLTVDQCLPHAHASIAVEQQFGCVKRGGTEMIQHNRIDSHHSKRTAENFRVEDTDVCIIEDNSHPVPTSQSEAVRNSLSIFQSSGYVGSQHYAVGSTRVKACDERNILQVALQDLSQPKSEISLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKLSACPNAQNGELETLNLDGEDDGLPQSSLLKKESDSCGDMSIRDPIKSKSLSLQTKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKEDEEKGIFEDSGVPNRKRKNPSNSSKSGKKRLDNALLEAAARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLDVCSSSIESLERLGGGDKTTPHYSCSIPTPTFEIFFFVSKLVKVLKISLNFI 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2025 899 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Amo01g2025 899 Gene3D - 555 643 IPR038718 -
Amo01g2025 899 Gene3D - 781 848 IPR038718 -
Amo01g2025 899 Gene3D - 680 770 IPR038718 -
Amo01g2025 899 PANTHER BNAA01G36010D PROTEIN 505 848 - -
Amo01g2025 899 CDD DEXDc_SHPRH-like 585 847 - -
Amo01g2025 899 MobiDBLite consensus disorder prediction 652 672 - -
Amo01g2025 899 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 505 848 - -
Amo01g2025 899 MobiDBLite consensus disorder prediction 36 58 - -
Amo01g2025 899 MobiDBLite consensus disorder prediction 761 796 - -
Amo01g2025 899 MobiDBLite consensus disorder prediction 761 781 - -
Amo01g2025 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 847 IPR027417 -
Amo01g2025 899 Pfam SNF2-related domain 605 847 IPR000330 GO:0005524|GO:0140658
Amo01g2025 899 SMART ultradead3 581 882 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2025 Amo-Chr1 57823301 57833625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2025 476 847 RAD5 or RAD16-like Gene Family AT1G61140 53.350 1.85e-108 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo01g2025 SNF2_N 3e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2025 - - gmx:100802436 925.62