Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2024 ATGGATAATGTTGTTACATTATTGTTAAAGTTAAAGCTGAGAAGCTTGTATAGTATAATGTTCTTACTTTATGTGTTGTGCTTAAGGGGTGTTATTGTGTCCTCTAGACATCATGAGAATGAGAGAAAAGTGACAACGATTATGAATAACAATAATAATAATAATAATGGTGATGTTGTGAGAGGCTTACCTGGCCAGCCTGCTGTGGATTTTGAGCACTATGCTGGCTATGTTACTRTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTTTGAGGCCATTACCAACCCAGATGATAAGCCTTTGGTCCTATGGCTTAATGGAGGACCTGGATGTTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACTCTGATGGGCAGGGACTCGAATTTAATAACTTGTCTTGGAACCAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAACACAACTAGTGATTATCAACAATTGGGTGATCAAATGACAGCTAATGATGCTTACACTTTTCTCCATAACTGGTTTCTCAAGTTCCCATCATATAGAACAAGGACTTTTTATATAGCAGGGGAGAGTTATGCAGGCAAGTATGTGCCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCTTCCCTTCATATTAATCTCAAGGGCATTATGTTAGGAAATCCAGAAACATCTGATGCTGAGGATTGGATAGGGCTAGTAGACTATGCTTGGAGTCATGCAATCATATCRGACGAGACTCACAAAACAATAAAAACAAGTTGTGACTTCAACAGCAGYGATCCATGGCGTAACCAAGATTGCAGTGAAGCAGTAGATGAAGTCCTCAAACAATACAGAGAAATTGATATATACAGCCTCTACACCTCTACTTGCTTTGCCTCTACAGCGCGCTCTTCCATGGCGCGCTCATCATCATCTACAACAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGACTATGCTAGAGCTTATTATAATAGACCAGATGTTCAGAAGGCCCTACATGCTGGTGATGGCCACAATCTCAAGAATTGGAGTATTTGCAACAATGATATATTCAATGGATGGGGAGATTCAAAGGCAAGTGTAGTGCCAATATACAGGAAGCTAATAGCAGGAGGAGGACTTAGGATATGGATTTACAGCGGAGACACAGATGGAAGAGTGCCAGTGCTGTCAACAAGGTATAGCTTAAGTTCTCTTGAATTGAGAGTGAGAAAGGCATGGAGGCCATGGTACCATGAGAATGAGGTGAGTGGGTGGGTAGAAGAATATGAAGGGCTAACATTTGCTACTTTCAGAGGAGCTGGCCACGCTGTTCCATGTTTCAAACCAAGTAGCTCTCTCGCCTTCTTCTCTTCCTTCCTTCGTGGACAATCCCCTCCTTCTACTAAATAA 1470 0.419 MDNVVTLLLKLKLRSLYSIMFLLYVLCLRGVIVSSRHHENERKVTTIMNNNNNNNNGDVVRGLPGQPAVDFEHYAGYVTXNETNGRALFYWFFEAITNPDDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGQGLEFNNLSWNQEANMLFLESPVGVGFSYSNTTSDYQQLGDQMTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGIMLGNPETSDAEDWIGLVDYAWSHAIISDETHKTIKTSCDFNSSDPWRNQDCSEAVDEVLKQYREIDIYSLYTSTCFASTARSSMARSSSSTTMMPRMMGGYDPCLDDYARAYYNRPDVQKALHAGDGHNLKNWSICNNDIFNGWGDSKASVVPIYRKLIAGGGLRIWIYSGDTDGRVPVLSTRYSLSSLELRVRKAWRPWYHENEVSGWVEEYEGLTFATFRGAGHAVPCFKPSSSLAFFSSFLRGQSPPSTK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2024 489 Pfam Serine carboxypeptidase 65 482 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 Gene3D - 340 378 - -
Amo01g2024 489 ProSitePatterns Serine carboxypeptidases, serine active site. 203 210 IPR018202 GO:0004185
Amo01g2024 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 163 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 189 214 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 152 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 485 IPR001563 GO:0004185|GO:0006508
Amo01g2024 489 SUPERFAMILY alpha/beta-Hydrolases 56 484 IPR029058 -
Amo01g2024 489 Gene3D - 387 482 - -
Amo01g2024 489 Gene3D alpha/beta hydrolase 55 313 IPR029058 -
Amo01g2024 489 PANTHER CARBOXYPEPTIDASE 17 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2024 Amo-Chr1 57811518 57814125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2024 345 483 Calmodulin-binding Proteins AT2G22960 33.571 5.19e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2024 K16297 - gmx:100793427 780.785