Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2023 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGCGGGTGASCAGCATCATCACCCTCAGCTTCCTCCAGGCTTTCGATTCCACCCCACAGACGAAGAACTCGTCGTTCACTACCTTAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAGTGGTACTTTTTCAGTCCTCGGGATAGGAAGTACCCGAATGGAGCTCGGCCAAACAGGGCGGCTACTTCTGGGTATTGGAAAGCCACCGGACGGATAAGCATCCCTCTTGATCCACTCAAGAAGACTTCTCTGCCAGGGATCTATATTATATTATTTAGTAGCAGCCTTCCAATTCCAAGGCCAGCGTTTTTAATGGATGAAGAGAAGGATCTAATTTCCATGGAGAGCAGCATGGTGCCAACTATGTCAATGTCAAAACCAAGAAGCACTTCAACAACAGGTTGTTATGGACCCATGGCACTTGAAAACGATGACAACTTCTTCGATGGTATATTGGCAGCATCAACCGATCATCACACCATGCAAAAAAGGTCTCCAGGGTCCTCATCTTCAAGCAAGAGATTCCATGGTGATCTTAATAATGGAGACAACACCTCCTTCGTTTCTCTTCTTAACCAGCTTCCTCACAACACACCGTTTCACCCAAACTCCATTCTTGGCTCCGTGGGAGACGCTGTCTTGAGGCAACAATTTCAACTTCCAGTGTCATAA 786 0.4682 MIMVDNSTDSSSGAGXQHHHPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGRISIPLDPLKKTSLPGIYIILFSSSLPIPRPAFLMDEEKDLISMESSMVPTMSMSKPRSTSTTGCYGPMALENDDNFFDGILAASTDHHTMQKRSPGSSSSSKRFHGDLNNGDNTSFVSLLNQLPHNTPFHPNSILGSVGDAVLRQQFQLPVS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2023 261 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 108 - -
Amo01g2023 261 Gene3D NAC domain 32 119 IPR036093 GO:0003677|GO:0006355
Amo01g2023 261 ProSiteProfiles NAC domain profile. 23 164 IPR003441 GO:0003677|GO:0006355
Amo01g2023 261 PANTHER NAC TRANSCRIPTION FACTOR 56 6 108 - -
Amo01g2023 261 MobiDBLite consensus disorder prediction 1 27 - -
Amo01g2023 261 MobiDBLite consensus disorder prediction 1 17 - -
Amo01g2023 261 Pfam No apical meristem (NAM) protein 24 109 IPR003441 GO:0003677|GO:0006355
Amo01g2023 261 MobiDBLite consensus disorder prediction 196 218 - -
Amo01g2023 261 SUPERFAMILY NAC domain 19 109 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2023 Amo-Chr1 57804129 57807323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2023 182 259 NAC Transcription Factor Family AT1G61110 42.105 4.57e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g2023 NAM 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2023 - - pvy:116129929 246.128