Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2020 ATGAATAGAGAGAGTAAAAGGGACGGTGGCAGCATGCAAAGTTCCCACGTAATGGTAGCAATTGGCACAACACTACATTTATTTACGGGTAACATTGCGACGAAATGTCAAATGAAATGGCAATTTGAAGATGTTATATATGAAACCAAAACAAGTAAAAGGGATGGCTTGTTTTGCAAGAAAGAGAATAGCTGTAATGAGGATGGTAAACTAATCTTGAAAGGGGTTAGCGGTTCTGTTTTCCCTGGTGAATTATTAGCCATTTTAGGTCCTTCTGGTAGTGGAAAAACAACTCTGATAAATGCATTGGGAGGTAGACTAAAAAATGGAATCACAAAAGGAAGCATAACCTACAATGGCAAGAAGCTCTTGAAATCCATGAAGCGAAACCTTGGATTTGTTCATCAACATGATCTCTTCTATTCTCACCTAACAGTCCATGAGACATTAGTCTTTTCGGCTCTTCTTCGCCTGCCAAACAGCCTCTCCAAACAAGAGAAAATCGCGCACGCTTGCGCGGTTATGGATGAACTTGACCTGAATCATTGTAAGGACACTATAATGGGAGGTCCACTCTTAAGAGGTGTGTCGGGTGGAGAACGGAAAAGGGTCAGCATAGGTCAAGAGTTGTTGACTAATCCTAGTCTTTTGCTTGTTGATGAACCAACTTCAGGGCTTGATTCGACAACTGCTCGGAGAATCGTGCTAATTCTGTGTGATTTGGCTAAATCTGGAAGGACTGTGGTAATGACTATTCATCAACCTTCTAGCAAGCTATTTTACATGTTCCCCAAGATTCTGCTGCTATCAGATGGTAGTACCTTGTACTTTGGGAAAGGAGAACTTGTCATGAATTACTTCTACAGCATTGGTTATGCTCCTTCTGTAGCCATGAATCCTACAGATTTCCTACTTGATCTTGCAAGCGGTATATATGCTGGAAATTTAGAAGATGAAGTTGAAGCTACAAAACAAGTGTTAAAATCAGCATTTGAAAGTAACCTTGCATCTCAAGTAAACATGGAACTCAAAAGCTCCAAGGTACCATTTCATAACACTTCAGGGGATGAAATGCTTGGCCAGTACTGCACAACATGGTGGCAACAATTYACTATATTAATAAACAGAGGTTTCAAAGAAAGGAAGTATGACCAATTTTCAATCCTCATAATCTGTAAAGTTTTGGCAGCATCAACCATTTCAGGCCTTGTTTGGTGGCAGGCCGGAGCTAATCAAACWAAAGACCTGGTGGGACTACTTTTCTACTACACACAAGTTAGTGCATACTTGCCTATGTTAGTGTCAATCTSCACCTTCCCTTRTGATCATGAAATGYTAATGAAGGAAAAATCTTGCTACATGTATAGACTCTCAACTTATGTCATGGCAAACAGTGTTGTTGAACTTCCAGCAGTGCTAGCAATGCCAACCATTTTTGTCACCATTACTTACTGGATGGTGGGGCTAAAACCAAATCCCTTAAATTTCTTYCAAACTCTAGCCATTGTTCTTCTCTATGCTTTGGTGTCACAGGGTATTGGTCTTGCCATTGGTGCAGTTGTGGTGAGTAATCAAAAGTTGGCTTCYAGAGTTGGATCGGTAGTCATGACTTTATATATTCTAAKCAATGGCTTCTAYGTTCAGCATGTCCCAAGTTTTGTGTCATGGATTAAACACATATCTCATAGCTATTATGGTTATAAGCTATTGTTGGGGTCACAGTTTAAGGATAATGTTACATGCTCAGTTAGAGAAYATCARGTGATTCAGCATGTTGGTCTTGATCATCAAATTTTCTCTGTTTTTGCCTTGGTTGCAATGGTTCTAGTGTACAGGATTATTGCCTATTTTGCTCTCATGATTGTTGTCAAACATAGCTAG 1881 0.3961 MNRESKRDGGSMQSSHVMVAIGTTLHLFTGNIATKCQMKWQFEDVIYETKTSKRDGLFCKKENSCNEDGKLILKGVSGSVFPGELLAILGPSGSGKTTLINALGGRLKNGITKGSITYNGKKLLKSMKRNLGFVHQHDLFYSHLTVHETLVFSALLRLPNSLSKQEKIAHACAVMDELDLNHCKDTIMGGPLLRGVSGGERKRVSIGQELLTNPSLLLVDEPTSGLDSTTARRIVLILCDLAKSGRTVVMTIHQPSSKLFYMFPKILLLSDGSTLYFGKGELVMNYFYSIGYAPSVAMNPTDFLLDLASGIYAGNLEDEVEATKQVLKSAFESNLASQVNMELKSSKVPFHNTSGDEMLGQYCTTWWQQFTILINRGFKERKYDQFSILIICKVLAASTISGLVWWQAGANQTKDLVGLLFYYTQVSAYLPMLVSIXTFPXDHEMLMKEKSCYMYRLSTYVMANSVVELPAVLAMPTIFVTITYWMVGLKPNPLNFFQTLAIVLLYALVSQGIGLAIGAVVVSNQKLASRVGSVVMTLYILXNGFYVQHVPSFVSWIKHISHSYYGYKLLLGSQFKDNVTCSVREXQVIQHVGLDHQIFSVFALVAMVLVYRIIAYFALMIVVKHS* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2020 626 CDD ABCG_EPDR 55 278 - -
Amo01g2020 626 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 35 623 - -
Amo01g2020 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 287 IPR027417 -
Amo01g2020 626 Gene3D - 61 289 IPR027417 -
Amo01g2020 626 Pfam ABC-2 type transporter 253 325 IPR043926 GO:0140359
Amo01g2020 626 Pfam ABC transporter 73 224 IPR003439 GO:0005524
Amo01g2020 626 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 296 IPR003439 GO:0005524
Amo01g2020 626 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524
Amo01g2020 626 Pfam ABC-2 type transporter 368 575 IPR013525 GO:0016020|GO:0140359
Amo01g2020 626 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 623 - -
Amo01g2020 626 SMART AAA_5 82 273 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2020 Amo-Chr1 57788833 57792306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2020 72 257 Calmodulin-binding Proteins AT2G36910 30.412 2.10e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2020 K05681 - gmx:100800295 794.653