Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2017 ATGAAGTTTTCAACATTGTGTTTGTCACCACAAAATATAGTAAAGTTCCTAAAACGATTCTTGGACCAATTGCCAGTGTGGAATTATGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCTATGGTGGTGGAAGAGAGTGGGAATCATAGCGGCAGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGTGAAGAATCTCATGGCCGAGAGGTGGCACAGGAAGAAGCTTAATGATAGGTTGTACATGTTTAGGTCTATTGTGMCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCAACTGCTTGAGGGAGTTACTGCAGCAGATTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTGGTTCTTCGCTGCAATCTTCCACCACCATCCTTCAAACTTTAACACCCACGCCGCAAACCCTTCCATGCCAGGGGAAGGAGGAACTGTATCCTGGTGTCTTGCCATGCCCCAACACCAACTTGCAAAGTCAAGATATTGGGTGGACCGAGTACAATTGTGAGTATCATTTTTCGGTTTTTTTGAAAAGAAAGTCAGGTCGCATTATCTCTTTGCAAGTCATGAGACTTGCAAGCTTCTTGGTTGTCGCAGCACTAGATCCTTTGATTATTCCAGCAGAAATTGGAATTGTTGTAGTTGTTGCAGCAGATTGGGAAGAGACAGCTCTTTTTCCTTTTCCCTTAGAAACCTGA 771 0.441 MKFSTLCLSPQNIVKFLKRFLDQLPVWNYDSDENVESGSKAMVVEESGNHSGRGNGNLSLSGGVNGGDQKGKKKGMPVKNLMAERWHRKKLNDRLYMFRSIVXKISKMDRASILGDAINCLRELLQQINDLHNELESTPPGSSLQSSTTILQTLTPTPQTLPCQGKEELYPGVLPCPNTNLQSQDIGWTEYNCEYHFSVFLKRKSGRIISLQVMRLASFLVVAALDPLIIPAEIGIVVVVAADWEETALFPFPLET* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2017 256 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 179 - -
Amo01g2017 256 Coils Coil 118 138 - -
Amo01g2017 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 139 IPR036638 GO:0046983
Amo01g2017 256 MobiDBLite consensus disorder prediction 46 75 - -
Amo01g2017 256 CDD bHLH_AtAMS_like 79 149 - -
Amo01g2017 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Amo01g2017 256 PANTHER BHLH TRANSCRIPTIONAL FACTOR 25 179 - -
Amo01g2017 256 SMART finulus 81 130 IPR011598 GO:0046983
Amo01g2017 256 MobiDBLite consensus disorder prediction 50 64 - -
Amo01g2017 256 Gene3D - 69 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2017 Amo-Chr1 57732325 57737114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2017 76 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 58.519 9.56e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2017 - - ahf:112733441 239.58