Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2004 TTTTTTGGTTTCTCCATCTTTTCTATATATAAGGCCGCTCCATTATCATGTTCATCTCCCCTTTCCTTTCTAGGCCAAAACAGAGTATCAGTGTTGTATCAATCAGCTCTTGAAATACAATACCTACCACAATTAACCTCCTTCGAAACATTACCAATAAAGGGAAAAAGAGAAAAGTTCTATATGGTTGCCGACACCATAGCCATCAACTACCACAACGACCGGATCTTACCCGAACCGGATGTCTTCATTCGCACCTCCGCCGGAACACGTATTCCTGCCCACTCCAGTATTCTGGCTTCTGTGTCGCCGGTTTTGGAGAACGTCATAGACCGCCCGCGAAAACATCGGAGCTCCGAAAGAATCATCCAGATTCACGGCGTTCCCTGCGAAGCCGTAGCCGTCTTCGTCACCTTCATCTACACCTCCAGGTGCACGGAGGAGCAGATGGACAAGTACGGGGTTCACCTGTTGGCATTGTCGCACGTGTACAACGTGCCGCAGCTGAAGCAGAGGTGCACGAAGGGGCTGGCACAGCGCGTGACGGTGGAGAACGTGGTGGACCTGCTTCAGCTGGCGCGTCTGTGCGACGCGCCGGATCTAGAAGTGAGGTGCATGAGGCTGCTCATGCGGCACTTCAAGGCGGTGGAGAACACCGAAGGGTGGAAGTTCGTTAACAACAACGATCCCTTGCTTGAACTCGATATCCTTCGCTTCATCGACGAACACGAAACGAGGAAAGAGAAATGCCGGAGGCACAGGGAGGAACAGAGAGTGTACTTTGAGCTAAGCGAAGCCATGGACTGCTTGGAACACATATGCACCGAAGGCTGCACCGACGTTGGGCCATGCCACGTGGACACCAGAAAGGAGAGGAGGAACCCCTGCAGCAGATTCGACACGTGTCACGGCCTCCAGCAATTGATTCGCCATTTTGCCACGTGTCAGAAGAGGATGAAGCTGGGGTGCCTTCGGTGCAAGCGAATGTGGCAGCTCTTCAGGTTACATGCCTACGTTTGCCAGCAAACTGATTCTTGCAAGGTTCCTCTTTGCAGGCAAATTCAATTGAAGATGCAACAAGAGAAGAGAAAAGACGATTCAAAGTGGAAATTACTAGCAAAGAAGGTAGCCTCAGCCAGAGTCATATCATCTTTGTCTCTTCCAAAGAGAAAGCGTGATGAGGAAACTAAAGTCACCATGGACAATAATGGCTTCACAAGTTTTGAGTTACATTGA 1236 0.5024 FFGFSIFSIYKAAPLSCSSPLSFLGQNRVSVLYQSALEIQYLPQLTSFETLPIKGKREKFYMVADTIAINYHNDRILPEPDVFIRTSAGTRIPAHSSILASVSPVLENVIDRPRKHRSSERIIQIHGVPCEAVAVFVTFIYTSRCTEEQMDKYGVHLLALSHVYNVPQLKQRCTKGLAQRVTVENVVDLLQLARLCDAPDLEVRCMRLLMRHFKAVENTEGWKFVNNNDPLLELDILRFIDEHETRKEKCRRHREEQRVYFELSEAMDCLEHICTEGCTDVGPCHVDTRKERRNPCSRFDTCHGLQQLIRHFATCQKRMKLGCLRCKRMWQLFRLHAYVCQQTDSCKVPLCRQIQLKMQQEKRKDDSKWKLLAKKVASARVISSLSLPKRKRDEETKVTMDNNGFTSFELH* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2004 411 Gene3D - 179 221 - -
Amo01g2004 411 Pfam TAZ zinc finger 264 351 IPR000197 -
Amo01g2004 411 SMART BTB_4 80 181 IPR000210 GO:0005515
Amo01g2004 411 SMART TAZ_2 257 352 IPR000197 -
Amo01g2004 411 SUPERFAMILY TAZ domain 255 355 IPR035898 -
Amo01g2004 411 Gene3D TAZ domain 245 387 IPR035898 -
Amo01g2004 411 CDD BACK 182 223 - -
Amo01g2004 411 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 62 409 - -
Amo01g2004 411 ProSiteProfiles BTB domain profile. 80 149 IPR000210 GO:0005515
Amo01g2004 411 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 62 409 IPR044513 -
Amo01g2004 411 Gene3D Potassium Channel Kv1.1; Chain A 73 178 IPR011333 -
Amo01g2004 411 SUPERFAMILY POZ domain 81 179 IPR011333 -
Amo01g2004 411 Pfam BTB/POZ domain 80 179 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2004 Amo-Chr1 57339913 57345823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Amo01g2004 BTB 4.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2004 - - cam:101496955 545.428