Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1982 ATGGCAACCATGCCTCTCTTCAAGTCCTTTACAATGGCATCACAATCATGGCTACTCTCTCCCCCGTCACTCTTTTACACCAAACCCAAACACTGCCCTTTTCACTCACTTCGTCATTCTTCTAGACTACTCAGATTTCAAGTTGCATCCTTCAATTCTTCTTCGTTCCTTTCACTTTCACGCTCTCTATGCCTCACCAACAGGACCATTCATCATTCTCCTATGCTCACCTTTGTCGCACAAGCGTCAGATTGGGCTCAGCAACAAGAAGTTGATGGTGAAGAAGAAGAAGCAACGTGGGAGAACGAAGGCGAACCCAAATGGGTAAACCAAGATGATGAAATTGAGGCTGTGATTGATGGTAGTGAGGGAGAAGGGGAAGGTGGGTTTGATGAAACTTCTGAGGATGCAAAACTCTTTGTTGGTAACTTGCCTTTTGATGTTGATAGCCAGAGACTTGCCATGCTCTTCGAGCAGGCCGGAACGGTGGAGATAGCCGAGGTAATTTACAATAGGGCAACCGATCGGAGTCGCGGGTTTGGATTTGTAACAATGAGTACAGTTGAGGAAGCTGACAGAGCTGTGGAGAAGTTCAGTGGCTATGAGTTAGATGGAAGAACGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCGCAGCCGGAGCGGTCACCGCGCACCTTTGATTCCTCGTTAAGAGTATATGTTGGTAACTTGCCTTGGGATGTTGATAATATTCGACTAGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGCAAGCTCGGATAGTGTATGACAGAGAGACTGGTAGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGCTTGGATGGGCGGTCACTCAGAGTGAGTGTTGCTGAGGAGAGGCCCAGACGCAGCTTCTGA 948 0.4715 MATMPLFKSFTMASQSWLLSPPSLFYTKPKHCPFHSLRHSSRLLRFQVASFNSSSFLSLSRSLCLTNRTIHHSPMLTFVAQASDWAQQQEVDGEEEEATWENEGEPKWVNQDDEIEAVIDGSEGEGEGGFDETSEDAKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADRAVEKFSGYELDGRTLTVNKAAPRGSQPERSPRTFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRSLRVSVAEERPRRSF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1982 315 CDD RRM_HP0827_like 232 308 - -
Amo01g1982 315 SMART rrm1_1 232 305 IPR000504 GO:0003723
Amo01g1982 315 SMART rrm1_1 138 211 IPR000504 GO:0003723
Amo01g1982 315 SUPERFAMILY RNA-binding domain, RBD 134 225 IPR035979 GO:0003676
Amo01g1982 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Amo01g1982 315 Gene3D - 220 314 IPR012677 -
Amo01g1982 315 Gene3D - 79 219 IPR012677 -
Amo01g1982 315 SUPERFAMILY RNA-binding domain, RBD 225 313 IPR035979 GO:0003676
Amo01g1982 315 CDD RRM_HP0827_like 138 215 - -
Amo01g1982 315 PANTHER RIBONUCLEOPROTEIN 5 314 - -
Amo01g1982 315 PANTHER OS02G0815200 PROTEIN 5 314 - -
Amo01g1982 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Amo01g1982 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Amo01g1982 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1982 Amo-Chr1 56500970 56504711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1982 107 313 Eukaryotic Initiation Factors Gene Family AT3G16380 31.019 1.19e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1982 - - gmx:100804984 365.54