Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo01g1977 | ATGGAGGATTTTTATGATGGTCATGGTGGTTTTCGTGCTGCAGAGTATTTGAAAGAGCATCTATTTGATAATCTCATGAAGCATCCAAAATTTTTTACTGATGCCAAATTGGCTATAAGTGAAATGTATCAAGGGACTGATTCTCAATTTCTGGATTCTAAAAAAGATACTTTCTGGGATGATAGCTCTATTGCTTCAACCACTGTATTGATTGATAACTATCTCTATGTTGCTAATGTTGGAGATTCTAGGACTATAATATCAAAGGCTGGTAAAGCAATTACTCTCTCTGAAGATCATAAGCCAAACAGAAGACGAACAATAATCACTGACAGGCACGGACCGAAGCATAATGATGGGGGGCACTTGCAAGAGATGCTAGTCAAACGCATGGATCAGAGACCCAAGAGAATATACCACAGCTGGCGTCCAATGACTACATTTAATGCTGATTGGTTTGATGAATTTGGCAATTCGTTGGAATATAGTATTTCAAAAGATGCTGTCTTTTGTCTCTGTTGCTATCTTATAAAACCTGATGGTATGAGTGGTGATGCTTTTGTAAAAGAGGGCTTTTCAAATTGGAAAAAAAAGGAGCAATTACAAACACATGTTGGAAATCGTGATAGTGCTCATAATCAAGCTCGAAGAAAATGCGAAGCACTCATGAAGTAA | 675 | 0.3748 | MEDFYDGHGGFRAAEYLKEHLFDNLMKHPKFFTDAKLAISEMYQGTDSQFLDSKKDTFWDDSSIASTTVLIDNYLYVANVGDSRTIISKAGKAITLSEDHKPNRRRTIITDRHGPKHNDGGHLQEMLVKRMDQRPKRIYHSWRPMTTFNADWFDEFGNSLEYSISKDAVFCLCCYLIKPDGMSGDAFVKEGFSNWKKKEQLQTHVGNRDSAHNQARRKCEALMK* | 225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo01g1977 | 224 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 224 | IPR001932 | - | |
| Amo01g1977 | 224 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 4 | 105 | - | - | |
| Amo01g1977 | 224 | PANTHER | ALPHABET, ISOFORM E-RELATED | 4 | 105 | - | - | |
| Amo01g1977 | 224 | SUPERFAMILY | PP2C-like | 5 | 106 | IPR036457 | - | |
| Amo01g1977 | 224 | SMART | PP2C_4 | 1 | 223 | IPR001932 | - | |
| Amo01g1977 | 224 | SMART | 2118neu4 | 148 | 224 | IPR006580 | - | |
| Amo01g1977 | 224 | CDD | PP2Cc | 5 | 106 | IPR001932 | - | |
| Amo01g1977 | 224 | Gene3D | - | 4 | 222 | IPR036457 | - | |
| Amo01g1977 | 224 | Pfam | Protein phosphatase 2C | 5 | 105 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo01g1977 | Amo-Chr1 | 56322063 | 56334106 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo01g1977 | 1 | 104 | PP2C-type Phosphatase Gene Family | AT5G53140 | 71.154 | 3.86e-47 | 159 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo01g1977 | K17506 | - | adu:107488705 | 215.312 |