Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1936 ATGGCTGCTTCTGCTTCTTCTTCTTYGSCTTCATCTTCTAAGAAGGATTCAGTGTACCGCGGAATCCGGTGCCGAGGAGGGAAATGGGTATCCGAGATCCGAGAGCCGAGAAAGACGACCCGAATATGGCTCGGCACCTTTCTGAAGCCGGAGATGGCTGCGGCAGCCTATGACGTGGCAGCACTGGCACTCAAGGGTGCAGAAGCACCCTTGAACTTCCCTGCCATGGTAGGGAAGTATCCAATGCCAGCGTCTAGTTCCGCAGCTGACATCCGCAGCGCTGCCACCGCCGCGGCGCAGCTGATTATGGCTGAACTTGCATCACCAACCAACAATAATGCAGTTCAGCCTAATATTGATAATGAAAACAATAATAATAATAATAATAATAATAATAATAATGATAATGACAACAATAACACTAATAATGATAGTGCTGCTCCTTTGTATGATGATGGACCGGTTGAGTTTTTGGACGAAGAAGCAATTTTCTCCTTGCCGAGTTTGCTGGTCGATATGGCAGAGGGAATGCTGCTTTCTCCACCCAGAATGAGTCCGTCGTCGCCCGACTCGCCGGAAAATTATTCCGGCGGAGGAGACAGTTTGTGGAACTACTAA 618 0.4838 MAASASSSXXSSSKKDSVYRGIRCRGGKWVSEIREPRKTTRIWLGTFLKPEMAAAAYDVAALALKGAEAPLNFPAMVGKYPMPASSSAADIRSAATAAAQLIMAELASPTNNNAVQPNIDNENNNNNNNNNNNNDNDNNNTNNDSAAPLYDDGPVEFLDEEAIFSLPSLLVDMAEGMLLSPPRMSPSSPDSPENYSGGGDSLWNY* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1936 205 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Amo01g1936 205 MobiDBLite consensus disorder prediction 175 205 - -
Amo01g1936 205 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Amo01g1936 205 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Amo01g1936 205 MobiDBLite consensus disorder prediction 189 205 - -
Amo01g1936 205 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Amo01g1936 205 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Amo01g1936 205 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Amo01g1936 205 MobiDBLite consensus disorder prediction 109 152 - -
Amo01g1936 205 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Amo01g1936 205 MobiDBLite consensus disorder prediction 109 147 - -
Amo01g1936 205 PANTHER ETHYLENE RESPONSE FACTOR 6 205 - -
Amo01g1936 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 205 - -
Amo01g1936 205 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1936 Amo-Chr1 54534394 54535633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1936 13 205 AP2-EREBP Transcription Factor Family AT5G52020 50.254 2.40e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo01g1936 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1936 - - adu:107489031 311.612