Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1930 ATGAAGGATATTGCATATCATCAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTTAGTGGAAGGGATCTACTTGGGTGTACTGAAACTGGTAGTGGGAAAACTGTAACTTTCACAATTCCTATGATACAGTGTGGTGATGGTTCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGTTCAACAAATAGAGAAAGAGGCTTTAACAGATCTCGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAATGCAGAATGCTGGTTATCCCTTGCCTGGTGAATTCGATGGAAAAGCATGTGCAGCCATTGAGCAGAGTAGTCTTATTTCTCTCTATGATACTATGTTCCTCCAGCTTGATGTGACTTCATCCCAACTTCTTGTGAATGATGGCTTCTTTAGGGATGCAGGTTTCAGAAAACAACTTTCAAACACTGTGCACTCACTATTGGATTTAAGAGTTATCCTCATTTTCAATGAAAATGATGCTGTTAGTACTAGGAAGACACCATATGAGGTGTTAGGTTCTAATTATCTTAGTGTGTTACTTGAGGCTATTGATATAAGTAAATTGCCAAGTTTTTTGGGTGGTAAATGCACATGTTCTGATTATGGAGGATGCTTAATGCACATGCTTAATCCAGATCTAGTCATATCCTTGAGAGAAGAGACGGATAGTAAAAATGATTCAAATAATGGTGATGTGGCTTCAGAAGATTCTCCTTCGTGCCCAAAAAGCCTTTTTACATGA 777 0.3951 MKDIAYHQYTRPTSIQAQAMPIALSGRDLLGCTETGSGKTVTFTIPMIQCGDGSLALVLAPTRELVQQIEKEALTDLESLKTAIVVGGTNIEMQNAGYPLPGEFDGKACAAIEQSSLISLYDTMFLQLDVTSSQLLVNDGFFRDAGFRKQLSNTVHSLLDLRVILIFNENDAVSTRKTPYEVLGSNYLSVLLEAIDISKLPSFLGGKCTCSDYGGCLMHMLNPDLVISLREETDSKNDSNNGDVASEDSPSCPKSLFT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1930 258 SUPERFAMILY CRAL/TRIO domain 182 224 IPR036865 -
Amo01g1930 258 Gene3D - 171 229 IPR036865 -
Amo01g1930 258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 20 95 IPR014001 -
Amo01g1930 258 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 95 - -
Amo01g1930 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 95 IPR027417 -
Amo01g1930 258 SUPERFAMILY Carbamate kinase-like 72 192 IPR036393 -
Amo01g1930 258 MobiDBLite consensus disorder prediction 233 258 - -
Amo01g1930 258 PRINTS Glutamate 5-kinase family signature 110 138 IPR001057 GO:0005524|GO:0016301
Amo01g1930 258 PRINTS Glutamate 5-kinase family signature 150 171 IPR001057 GO:0005524|GO:0016301
Amo01g1930 258 MobiDBLite consensus disorder prediction 239 258 - -
Amo01g1930 258 Pfam DEAD/DEAH box helicase 13 95 IPR011545 GO:0003676|GO:0005524
Amo01g1930 258 Gene3D - 1 162 IPR027417 -
Amo01g1930 258 SMART ultradead3 8 198 IPR014001 -
Amo01g1930 258 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1930 Amo-Chr1 54324240 54326696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1930 1 92 Eukaryotic Initiation Factors Gene Family AT3G13920 39.796 7.20e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1930 K12823 - gmx:100787545 155.221