Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1928 ATGGGCAACCATTGTATAATGGGAGGAAGAAATACTTACATTTTGATTCATGTGAGTCACCTGTTGAATGGAAATGCTGTTGTTGCTTTCAGAATGATCAGCTTGGGTGCCCTCTATGTCACGGTGAGAATTCATGCTTCTGTTGCTGTCAACATTGGAGGAAATAACATCAACTTGATGCTTAAAGTTCCTCTTTTGACACCGGATCTTGCTGAAGCCTTCATTTCTTTGCTGCAAGAAAACTTGATGCAACCTAATTTGCCATTAGTCATTTCTTTGGTAGCGACATTGGATTTCCTTGAGATTTGTGCTGGCTTCATGATGATAATTGAAAACTTTCTACCCCGGGGTGAACTTGAAATATCATCAGTGACAAATGTTGGGTTGGTCTGTTGTCTTGGGGACTGGACTCAGAATGGAAATGAATCCTTTCAAGTGCACCTCAGATGGCTGATATGGCTAGAACAATTTCGAGAGATTCTGACAAGCACCAAAAAAATGTCTGAGTATGAAGGGAAGCATAAGACTGAGAAGTTGGAGGAACTTGGGAATATGCTAACTGGTCTTGATGCTGGGGATTCTATTGGCGATTTTGCTGATGAGAAATCTGCCATCACTGAATCTGACATTGAAGAAACCTTCAAGAGGCTTGTGACTGAACTGAAAAAGTCCCCACAGGAACTGTTTGATGCTTTGAAGAAGCAAACTGTAAATTTGGTCCTAACTGCTCATCCCACTCAGTCCGTTCGTCGATCTCTGCTGCAAAAGTATGGAAGCAATGGCTCTAAAGATGTTTACCTCATGCAAATTCAAGCTGCATTTCGCACAGATGAAATTCGACGGAGTTCTCCAACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATATGGAAAGGTGTACCAAAGTTTTTGCGCCGTGTCGACACAGCTCTGAAGAACATTGGAATAAATGAGCGTGTCCCATACAATGCCCCTCTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGGAACCCTAGGGTAACCCCTGAAGTTACAAGGGATGTGTGTTTTCTGGCTAGAATGATGGCTGCTAATTTATACTTCTCTCAGATAGAAGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAGCTTCGTGTTCGTGCTGATGAACTCCATGTGTCCTCAAGGAGAGATGCAAAACATTACATTGAATTTTGGAAGCAGATTCCTCTAAATGAGCCATATTGTGTTATTCTTGGTGATGTGAGGGACAAACTATACAATACCTACGAACGTGCTCGCCAGTTATTAGCCAATGGAACCTCTGACATCCCTGAAGAGACAACCTTCACAAATGTTGAGCAGACAGCTAGCCCTGAGCTTCAACAAGCATTGCATATTCAGCGTTTATCCGAACAAACATCTTTGAAGAGACTCAAAGCTTTAACTTATATGAAAAGGCAAATTCGGAATCTTTTGTGTGGGAATGTGTTCTCTCGAAAATTGTTGGAGAATGCTGAGTTGGGAATTGAGCAAAAACAACTTTTGCACACTGGCACTCAATGGCTCAGTGCCAATGCCAGCGTCATGAAAAAGAGCAAGGCAATGGGTATCCATATAATCAACGAAGTCATGGAGCACATCATGACAGAAACCTTATATGGTGATAGTCTTAGGCTGCAGCAAGTCTTGGTTGACTTCTTATTGATTTGCATCAATTTTATGCCAACCGGAGGTCAAGTTGTTGTTGCAGCCTCTTTAACAAAAGATCAATTAGGCAAATCAGTTCATTTGGCTAACTTGGAGATAAGCATAACACATGATGGTGTTGGTGTTCCAGAAACATTGCTGAACCAAATGTTCAGACGAGACAGACAAGAATCCGAGGAGGGTATTAGTCTGCTCATCAGCAGAAAGTTGCTAAAGCGGATGAATGGAGACGTGCAGTATCTGAGGGAAGCTGGCAAATCATCTTTCATCTTAATAGTTGAACTGGCTGCTTCCTAG 2019 0.422 MGNHCIMGGRNTYILIHVSHLLNGNAVVAFRMISLGALYVTVRIHASVAVNIGGNNINLMLKVPLLTPDLAEAFISLLQENLMQPNLPLVISLVATLDFLEICAGFMMIIENFLPRGELEISSVTNVGLVCCLGDWTQNGNESFQVHLRWLIWLEQFREILTSTKKMSEYEGKHKTEKLEELGNMLTGLDAGDSIGDFADEKSAITESDIEETFKRLVTELKKSPQELFDALKKQTVNLVLTAHPTQSVRRSLLQKYGSNGSKDVYLMQIQAAFRTDEIRRSSPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCFLARMMAANLYFSQIEDLMFELSMWRCNDELRVRADELHVSSRRDAKHYIEFWKQIPLNEPYCVILGDVRDKLYNTYERARQLLANGTSDIPEETTFTNVEQTASPELQQALHIQRLSEQTSLKRLKALTYMKRQIRNLLCGNVFSRKLLENAELGIEQKQLLHTGTQWLSANASVMKKSKAMGIHIINEVMEHIMTETLYGDSLRLQQVLVDFLLICINFMPTGGQVVVAASLTKDQLGKSVHLANLEISITHDGVGVPETLLNQMFRRDRQESEEGISLLISRKLLKRMNGDVQYLREAGKSSFILIVELAAS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1928 672 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 196 463 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 157 497 IPR015813 GO:0003824
Amo01g1928 672 ProSiteProfiles Histidine kinase domain profile. 541 672 IPR005467 -
Amo01g1928 672 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 559 667 IPR003594 -
Amo01g1928 672 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 167 195 - -
Amo01g1928 672 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 196 463 - -
Amo01g1928 672 SMART HKATPase_4 559 671 IPR003594 -
Amo01g1928 672 Gene3D Phosphoenolpyruvate/pyruvate domain 362 507 - -
Amo01g1928 672 Gene3D - 524 669 IPR036890 -
Amo01g1928 672 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 666 IPR036890 -
Amo01g1928 672 PRINTS Phosphoenolpyruvate carboxylase signature 334 349 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 PRINTS Phosphoenolpyruvate carboxylase signature 239 252 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 Pfam Phosphoenolpyruvate carboxylase 268 463 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 Pfam Phosphoenolpyruvate carboxylase 202 257 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 167 195 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo01g1928 672 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 240 251 IPR018129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1928 Amo-Chr1 54277087 54282328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1928 459 672 Histidine Kinase Gene Family AT1G09570 54.435 7.40e-75 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1928 K01595 - adu:107488857 545.428