Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1892 ATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCAGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCACATCTGGTTCCGGCCAATCATCGTCTCACTATCACTGATAAAGTCCAAAACACCCTCATTGACTTCATGGATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAGTTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATAACCTCGTTAGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGGAAATTTGTAATGAGATTCAGAGTGCGGGCGCTTTGAATATTAAGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACAGGTAGAAGTCGATAGAGGTAAGAAACTGCTCTTGTGCTCGTGCAAGCTGTTTGAATCATGTGGTATTCCCTGTAGTCATGTCTTTTGTGCCATGAAGTTTGAAAACATACTTGAGTTTCCAGATTCATTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAACGATGACGTCGAAAGGTCATGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGCACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGAAAGGTAACCCTCGCAATCGATCAGACGGCAATGCATCAGCCAAGGACTTAGATTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGTTCATTCTCAATTAAGTTCGAACACCACTCAGGACCTAAGACCAAGCCTTTTAAAAAGGGTGGAATAAGGAAGTTTACAGTGACGGGTATGAGGAACCCGAAGGGTAAAGACAACACTTTTGATGAGATCTCATTCTTCTTGTTTAAAAAAAATTTTATAAAACAACGGAGCCTCCATGAAAGCGGTAAATCCATTGACATCGCGTCCATGAATGGATTTTTCAACAAAAATCTCTACTCGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGGGACATTCATTCACAAACTATAAATGCGTTAATGATGTCATGGATGAGAAATGTGACACACCACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCAATGCCTTGTGGCAACAAACAAGGATCGTACATAGCATTATTCGCGTCGATGCATAGGACACTTTGA 1416 0.4294 MRYLDLDDRSREARSLTRTKCPAQLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANHRLTITDKVQNTLIDFMDNLDRALKEYRNNELIVDFKSQCSEPVMITSLEVYERSASCYFTRNIFKEICNEIQSAGALNIKVLSTTLDKVEFSVTALGDPAKDRQVEVDRGKKLLLCSCKLFESCGIPCSHVFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDVERSCKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKHGHYYKRCPDLMQHSVKGNPRNRSDGNASAKDLDFSPERFANSSSSFSIKFEHHSGPKTKPFKKGGIRKFTVTGMRNPKGKDNTFDEISFFLFKKNFIKQRSLHESGKSIDIASMNGFFNKNLYSLTQVKESQQDKGHSFTNYKCVNDVMDEKCDTPHVQIDVRDPLPSSMPCGNKQGSYIALFASMHRTL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1892 471 MobiDBLite consensus disorder prediction 295 317 - -
Amo01g1892 471 SUPERFAMILY Retrovirus zinc finger-like domains 261 293 IPR036875 GO:0003676|GO:0008270
Amo01g1892 471 ProSiteProfiles Zinc finger SWIM-type profile. 165 201 IPR007527 GO:0008270
Amo01g1892 471 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 66 IPR031052 GO:0006355
Amo01g1892 471 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 74 238 IPR031052 GO:0006355
Amo01g1892 471 Pfam FAR1 DNA-binding domain 8 50 IPR004330 -
Amo01g1892 471 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676|GO:0008270
Amo01g1892 471 PANTHER OS12G0160900 PROTEIN 74 238 - -
Amo01g1892 471 PANTHER OS12G0160900 PROTEIN 16 66 - -
Amo01g1892 471 SMART 26again6 176 203 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1892 Amo-Chr1 51867653 51870311 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g1892 FAR1 1e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1892 - - ahf:112723022 706.442