Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1883 ATGTTCTTCTTCTTTTCCCAGATTAAAAACATTTTGATGCCGGGCATAGCGGATCCACACAGCAGCTGGCAAAACTGCAGGGATGACATAAGCAATTGGACACCTGATCAACTAGATGTTGTGCAAGGGTTTAGAGAGGATTTCATAAAGGCGTTGAGTGGGGCAAGAGAAAGCTTGGAGGAAGTTGTGAGAAGAGAAACATGGGAGGAGACTGGTATTGAAATGGGAGAAGCTCTTAGCCATGGCCTGAATGGGGATTCCAGCCATGTTTTGAGGATCTTTGACGAGGAGGCACAAGCTATGCAATTGGTTCGAAACTCAAGGCTTGAGCTGCAGAATTCTACTGTACTTGGGGAAACTATCCTTTCATCAATACATGGGCAAAGAGGATCGTGTCTGCTGAATTACTTTCCAATATCAGATGCAAAACTTTGTCTGACTTTAGATGGTACAAGGACACCTTTCTTACTAGGACTTCCCAAATCCTTGGGAGATAAAGTAAGGGACAAAATTCGTAGCTTAACCCCAGATGGGATAATTTCCTATGATGCATTAAGTTATGGTCAAATTATCTTTTTCATCCAAAAAGTTGCTCTAAAGATTTGTCAAGATGATAAAATCCAACGGCAACTTGCTCGTGAGAAAACACAAAATTGTATCGATTTGGGAACTTTCTGTGAACAATTTGGTCTTCCTGCTTGTCATCCAAGAAAATCTAAAAGGCCATCCAATCAAAAAAATTTCCAAAAGTATCCCCAGAAAAATCTCATTATTTGCTATACATGTAAAAAACCAGGACATGTTAGCAAATACTGTAGGTTAAAAAGAAAGATTAATAATCTGAACCTTGATCCTCAAATTGAAGAACAGATTAACAATCTTTTAATTGAAAGTTCAAATGATGATTCTGGACCAGAATCTTCGGATGATATTAATAATATCCAAGTTGATGATATTGGATCATCTTCAGATTCTGATGTTAAGGAAATTAATGTTTTATCCAAAGATAAAGATCTCTTATTTGAAGAGGCTATTGAAAAGAAGCCCAAAAATCTTGTCCTTAGCAATAAATATGATGTCAAACCTATTTTCAAAAAATTAGAAAAACAAGTTATTCGTCCTATAACCATTCAGGATTTACAGACTGAGGTTAACAACCTTAAGAAGAAAATCAAAGGAATCAAAAGAAATCAAGACGATCATCAATTCATTCTCTCGCAATTAATGCAAGGTGAAGAGTCTGATGATGGAGAACTTGACTCTCTTGAAAAACAACTTGAGTTTTCTGGAAAACGGGAAAATAAAAGCTCTAACGATAATAAGGGAAAAGAAATCTTGGGATTAATAAATATATTCTCTTTTGTGAAATGTCGTGTTAATATCCAAATTGTCGTTAAAGATTTTGTTCTCGAAACCATCGCACTCTTTGACACAGGTGCAGATTCAAATTGTATTAAAGAAGGTCTGATCCCCACAAAGTATTTTGAAAAAACTACTGAATGTCTTAGCTCGATAATGGGTGAAAGACTACAAGTCAATTTTAAATTAACCAATTCTTTTGTTGAAAAGGGTAATCTTAGGATTCCAACAAATTTCATCATAGCAAAAGATATAAAAAATGATATAGTCTTGGGGACACCTTTTGTAATCCTTTTGTTTTCATACCTAGCAGATTTTGTTGGAATTACCTCTTATGTGGGTGGACAGAAAACTTTCTTTGAATTTCTAGACTCAATAACTCAGAAAGCTTTAAACCAAATTGAATCCAAAACCAAACAGATTTATTTGTCTCATGCCTTCTGGAAAAGGAAAGAACATATTGTTGATCTTCCTTATGAAAAAGATTTCAAAGAATCACAAATCCCTACAAAAGCTCGCCCCATTCAAATGAATGAGCATCTTTTGCAGCAT 1911 0.3537 MFFFFSQIKNILMPGIADPHSSWQNCRDDISNWTPDQLDVVQGFREDFIKALSGARESLEEVVRRETWEETGIEMGEALSHGLNGDSSHVLRIFDEEAQAMQLVRNSRLELQNSTVLGETILSSIHGQRGSCLLNYFPISDAKLCLTLDGTRTPFLLGLPKSLGDKVRDKIRSLTPDGIISYDALSYGQIIFFIQKVALKICQDDKIQRQLAREKTQNCIDLGTFCEQFGLPACHPRKSKRPSNQKNFQKYPQKNLIICYTCKKPGHVSKYCRLKRKINNLNLDPQIEEQINNLLIESSNDDSGPESSDDINNIQVDDIGSSSDSDVKEINVLSKDKDLLFEEAIEKKPKNLVLSNKYDVKPIFKKLEKQVIRPITIQDLQTEVNNLKKKIKGIKRNQDDHQFILSQLMQGEESDDGELDSLEKQLEFSGKRENKSSNDNKGKEILGLINIFSFVKCRVNIQIVVKDFVLETIALFDTGADSNCIKEGLIPTKYFEKTTECLSSIMGERLQVNFKLTNSFVEKGNLRIPTNFIIAKDIKNDIVLGTPFVILLFSYLADFVGITSYVGGQKTFFEFLDSITQKALNQIESKTKQIYLSHAFWKRKEHIVDLPYEKDFKESQIPTKARPIQMNEHLLQH 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1883 637 ProSiteProfiles Zinc finger CCHC-type profile. 259 273 IPR001878 GO:0003676|GO:0008270
Amo01g1883 637 MobiDBLite consensus disorder prediction 297 324 - -
Amo01g1883 637 Coils Coil 377 397 - -
Amo01g1883 637 SUPERFAMILY Nudix 56 75 IPR015797 -
Amo01g1883 637 SMART c2hcfinal6 258 274 IPR001878 GO:0003676|GO:0008270
Amo01g1883 637 Pfam Pectinacetylesterase 6 58 IPR004963 GO:0016787
Amo01g1883 637 PANTHER - 153 384 - -
Amo01g1883 637 ProSiteProfiles Aspartyl protease, retroviral-type family profile. 472 507 IPR001995 GO:0004190|GO:0006508
Amo01g1883 637 Pfam Retroviral aspartyl protease 458 536 IPR018061 -
Amo01g1883 637 PANTHER - 153 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1883 Amo-Chr1 51021149 51025551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1883 7 58 Carbohydrate Esterase AT4G19420 50.000 5.65e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1883 - - adu:110272984 265.003