Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1880 ATGTCAAGCACAGATGGTGCAGGCGCAGGGGTTTATGCAACTATCGTCGTTGTTGTAATAATGGTGAAACTAGCTATTGTAGTTTGTGTATGCCGAGAAAGGATGAAGAATAATAAAGACGGATCGGTTCGTCCAGCCATACCGTTCTTGACAATCACAATTGATAAGTTCTTGAATGATATTGAAAGGGAGAAGCCAATTAGATTCACCGATCAGCAGCTACGCATTGCGACCGATAACTACTCGAATTTGTTGGGATCAGGAGGTTTCGGCGCAGTTTACAAAGGAATCTTCAGCAACGGCACAATTGTGGCTGTGAAGGTGTTGTATGGAAGTTCTGACAAAAGAATTCAAGAACAGTTTATGGCAGAAATGGGAACACTTGGTAGGATCCACCATTTCAATCTTGTTCGGCTGTACGGATTTTGTTTCGAAAGGAACTTGATAGCGTTGGTTTATGAGTACATGGGAAATGGATCTCTTGACAGGTATTTGTTTAGAGAAATCAAGGCTTTGGAGTTTGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGCATCGCTTATTTACATGAAGAGTGCCAACACAGAATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACAAGAATTTCAATCCAAAAGTCGCCGATTTTGGTTTGGCCAAGCTTTGTAACAGGGATAATACTCATATATCCATGACTGGAGGCAGGGGAACTCCCGGTTACGCTGCACCAGAACTTTGGATGCCATTTCCTGTCACTCACAAGTGCGATGTTTACAGCTTTGGCATGTTGTTATTGGAAATCATAGGCAGGAGAAGAAACGTAGACACGAATCTTTCAGAAAGTCAGGAATGGTTTCCAATCTGGGTTTGGAAGAAATACGATGGCGGAGAATTAGGAAATTCGAAAATAGTGGCGGAAATGGAGGAGAAACAAAAGGAAATGACAATGAGAATGGTCAGGGTGGCTCTATGGTGTGTCCAATATAGGCCAGAACTAAGGCCTAATATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGATGAGATTCCAGAACCATTGAATCCATTTCAACACTTGATTGGAGGTACTTTTGTTGCTCATCCAGTACAAGTTTCACAGGGCTATACTGAAAGCAGTAGCATCTATACTGGCTCTTCTATTATGGTAACTGACTCAAGCATTGTGTGTGCAACTCCTATTATGCACAAGTATGAGATTGAATTAGCCTCTAGCAGAGCTGATGACTCATGCAGGACACATTAA 1281 0.4176 MSSTDGAGAGVYATIVVVVIMVKLAIVVCVCRERMKNNKDGSVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGAVYKGIFSNGTIVAVKVLYGSSDKRIQEQFMAEMGTLGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFREIKALEFEKLHEIAVGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLLEIIGRRRNVDTNLSESQEWFPIWVWKKYDGGELGNSKIVAEMEEKQKEMTMRMVRVALWCVQYRPELRPNMSVVVKMLEGSDEIPEPLNPFQHLIGGTFVAHPVQVSQGYTESSSIYTGSSIMVTDSSIVCATPIMHKYEIELASSRADDSCRTH* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1880 426 SMART serkin_6 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1880 426 SUPERFAMILY Protein kinase-like (PK-like) 64 350 IPR011009 -
Amo01g1880 426 ProSiteProfiles Protein kinase domain profile. 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g1880 426 PANTHER PUTATIVE-RELATED 9 416 - -
Amo01g1880 426 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 416 IPR045874 GO:0004672
Amo01g1880 426 Pfam Protein tyrosine and serine/threonine kinase 83 349 IPR001245 GO:0004672|GO:0006468
Amo01g1880 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Amo01g1880 426 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Amo01g1880 426 Gene3D Phosphorylase Kinase; domain 1 54 155 - -
Amo01g1880 426 CDD STKc_IRAK 85 351 - -
Amo01g1880 426 Gene3D Transferase(Phosphotransferase) domain 1 156 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1880 Amo-Chr1 50882793 50884696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1880 68 362 Receptor kinase-like Gene Family AT5G38280 42.763 1.19e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Amo01g1880 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1880 - - gmx:100816921 645.58