Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1877 ATGGAGTCAAGCGCCGGCGGCATCAGCGGCGGCGTTACGGTGGTCGGATCAGATGCTCCGTCGGAGTATCAAATAGCTCCGAGGACAGAGAACCCTTCTCCAGCAGGAGGATCGGCCGCGCCAATCCCTGCGCCAGCTCCGACGAACCAAGGCGGTGCTCTGCCGCATCCTCCGCCACATATGGCGAAGATGACATCGCCTCCGGCAACAGCGCCGGGGAAGAAGAAGAGAGGGCGGCCCAGAAAGTATGGCCCAGACGGGTCAGTGGTGGCGCTGTCCCCAAAGCCAATATCGTCTTCGGCACCGCTGGCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGACGAAGCGCGGGAAGGTGAAGGCAGCTGGTACCGTGAGCAGAGCCAAGTTTGAGGTTGAGAATTTAGGTGAATGGGTTGCATGCTCGGTTGGTGCTAATTTCACACCCCATTTCATCACTGTTAATCCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGCCCACGAGCTATATGCATTTTGTCAGCAAATGGAGTCATATCAAGTGTTACACTTCGTCAGCCTGATTCTTCTGGTGGCACATTGACGTATGAGGGACGTTTTGAAATTCTATCTCTAAGCGGCTCGTTCACACCAAGTGAAACTGCAGGAACACGAAGCAGATCGGGTGGCATGAGTGTCTCTTTAGCAGGTCCAGATGGACGAGTTATAGGTGGTGGAGTCGCTGGTCTATTGGTGGCTGCAAGTCCCGTGCAGGTAGTGGTTGGAAGTTTTCTAGCAGGGAACCAACATGAGCAAAAGCCAAGAAAACCAAAACCTAATATTATAGCATCAACTGTGATGCCGGCTGCGAGTGTTCCTGTGTCAACGGCCGATCCAGTTGCTGTTCTGCAATCGCAGGCTTCCTTCCGAGGAGATAGTTGGTCTGCTGTTCCTGCAGATGTGAATAAGAACAAGCCGGCTGACATTAATGTGTCGCTTCCTGGAGGGTAA 1008 0.5347 MESSAGGISGGVTVVGSDAPSEYQIAPRTENPSPAGGSAAPIPAPAPTNQGGALPHPPPHMAKMTSPPATAPGKKKRGRPRKYGPDGSVVALSPKPISSSAPLALPPVIDFSAETKRGKVKAAGTVSRAKFEVENLGEWVACSVGANFTPHFITVNPGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSETAGTRSRSGGMSVSLAGPDGRVIGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKPKPNIIASTVMPAASVPVSTADPVAVLQSQASFRGDSWSAVPADVNKNKPADINVSLPGG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1877 335 CDD DUF296 149 263 IPR005175 -
Amo01g1877 335 MobiDBLite consensus disorder prediction 1 94 - -
Amo01g1877 335 ProSiteProfiles PPC domain profile profile. 145 288 IPR005175 -
Amo01g1877 335 MobiDBLite consensus disorder prediction 48 65 - -
Amo01g1877 335 Gene3D - 150 278 - -
Amo01g1877 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 266 - -
Amo01g1877 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 333 IPR039605 GO:0003680
Amo01g1877 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 333 - -
Amo01g1877 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1877 Amo-Chr1 50776586 50782475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1877 4 332 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.621 1.26e-124 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1877 - - gmx:100801730 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1877 01 50776586 50782475 Amo11g1458 11 55625536 55630593 hybridization