Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1875 TTCGAAAAATCTACTGATAGAACACGTATTACTGAGGACAGGGTTATTTTTCCAACAGTAGACGTAGAGCTATCTTTCTTTCAGGAGCATGTTGAAGAAAAAAGCCAATTTAATAACTTCTGGTGTTTGATTGAAAGAATTCAAGGTGAAAGAGCAACATTTAATTCCGAAGTTGAATTTTGTTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATCCAGAGGCATTTCAAGAATGAAGAAGTTCAGGTTCTTCCGTTTGCACAGAAGCACTTTAGTATCGAAAGGCAACCTCCAGCAACAAAGTCTGCTTTAGTCACCCTCTTTTGTGGTTGGACTTGCAAGGCTCGTAACTATGGTCTGTGTTTGTCTTCAAGTGCATTAGGTTGCTATCATGCTCAAACATTTGCTGACATTGAAGAGAATATTGTTCAGCCCTCCTGTGACCAGCACATTTCACAGTTTAATGAAGAGGCACGCTTTCAATACATCAAGAAGTACAAGACCATCATACATCCAAGAGAGGTAATACATAATCGAAAAAGTTATAGTATGGCCTTGGCTTGA 573 0.3892 FEKSTDRTRITEDRVIFPTVDVELSFFQEHVEEKSQFNNFWCLIERIQGERATFNSEVEFCSKLCSHADHIMETIQRHFKNEEVQVLPFAQKHFSIERQPPATKSALVTLFCGWTCKARNYGLCLSSSALGCYHAQTFADIEENIVQPSCDQHISQFNEEARFQYIKKYKTIIHPREVIHNRKSYSMALA* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1875 190 Gene3D nmb1532 protein domain like 10 106 - -
Amo01g1875 190 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 101 169 - -
Amo01g1875 190 PANTHER CHY ZINC FINGER PROTEIN 101 169 - -
Amo01g1875 190 PANTHER CHY ZINC FINGER PROTEIN 10 99 - -
Amo01g1875 190 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 10 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1875 Amo-Chr1 50659056 50662824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1875 10 151 C2H2 Transcription Factor Family AT3G18290 42.935 8.85e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1875 K16276 - gmx:100801725 195.667