Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1871 ATGTCTAGCAGAAGGTCAAGGCAGCCAAGTGGTTCAAGCAATATCAGTGACGATCAGATAAAGGATCTTGTCTCCAAGTTACAGCAGCTTCTTCCTGAGATTCGCCATACACGCACTGACAAGGTGTCATCTGCGAAGGTGTTGCAAGAAACATGCAACTATATAAGAAGCTTACACAGAGAAGTTGATGATCTTAGCGAGCGTTTGTCGGAGTTGTTGGCAACAACTGACACCGCCCAAGCGGCATTGATTAGAAATTTACTTCTCCAGTAG 273 0.4505 MSSRRSRQPSGSSNISDDQIKDLVSKLQQLLPEIRHTRTDKVSSAKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAALIRNLLLQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1871 90 Coils Coil 55 75 - -
Amo01g1871 90 CDD bHLH_AtPRE_like 10 75 - -
Amo01g1871 90 Pfam Helix-loop-helix DNA-binding domain 18 59 IPR011598 GO:0046983
Amo01g1871 90 PANTHER TRANSCRIPTION FACTOR PRE 1 88 IPR044293 GO:0006355|GO:0040008|GO:0046983
Amo01g1871 90 Gene3D - 17 86 IPR036638 GO:0046983
Amo01g1871 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 76 IPR036638 GO:0046983
Amo01g1871 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Amo01g1871 90 PANTHER TRANSCRIPTION FACTOR PRE3 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1871 Amo-Chr1 50576103 50577354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1871 15 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 77.922 1.18e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g1871 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1871 - - rcu:8277393 144.05