Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1861 ATGGGAATATATAAGAAGGTTTTTAAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGAAAGGGCTAAAAGTGGGACAGGCAAAACAGCTGCATTTTGCATTCCTACATTGGAAAAAATTGACCAGGATAATAATGTTATTCAAGGTTTGACTTCAAGTCCAACCTTCTATAGTTGTTATTATTATTTTTATTTTCCCAAGAATTTAGAAACTTATCTCCACAGGGTCGGTCGCTCAGGGTGGTTTGGGCATCTTGGTTTAGCAGTTAACTTGATCACTTATTGCGACCACTTTAATTTGATTGAACAAGAATTTGGAATTAAAATAAAGCAAATTCCACCATACATTGACCAGATTATTCGTGAAGTGTATTGTGGAGCTTTCCATTTGGTTCCTTTATCCGATGAAGGCCTTGTACAAGCTTTGGGTGATTCAATGACATTTCTTAATTCGCTTCCTAGAAATTCATTTTTGTTTATGTTTGTAAATTTCATGTACACTGTCGTTGCATGTATAGAGATAACATGGCTAATTTGGTTTGAATTCTATTAA 582 0.3505 MGIYKKVFKRPSPIQEESIPIALTGSDILERAKSGTGKTAAFCIPTLEKIDQDNNVIQGLTSSPTFYSCYYYFYFPKNLETYLHRVGRSGWFGHLGLAVNLITYCDHFNLIEQEFGIKIKQIPPYIDQIIREVYCGAFHLVPLSDEGLVQALGDSMTFLNSLPRNSFLFMFVNFMYTVVACIEITWLIWFEFY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1861 193 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 65 - -
Amo01g1861 193 Gene3D - 1 68 IPR027417 -
Amo01g1861 193 Pfam DEAD/DEAH box helicase 13 65 IPR011545 GO:0003676|GO:0005524
Amo01g1861 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 102 IPR027417 -
Amo01g1861 193 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 72 130 - -
Amo01g1861 193 Gene3D - 69 134 IPR027417 -
Amo01g1861 193 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 1 65 - -
Amo01g1861 193 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 72 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1861 Amo-Chr1 49322709 49324873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1861 2 65 Eukaryotic Initiation Factors Gene Family AT3G19760 35.938 1.02e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1861 K12614 - ahf:114925348 138.272