Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1851 ATGAAGGGCAAGGAAGGTAAAATTTTCATGGTAGTGGGAACTGTAACTGATGATATCAGAGTGCATGAAGTTCTTGTATTAAAGGTTACTACACTCAAGTTTATAGAGACTGCATGTGTTAGAATAGAGATGGCTGGTGGTGAATGCTTGACATTTGATCAGCTTGCACTTAGGGTACCTCTCGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAACTCAAGGGAAGCTGTGAAACAATTTGGGCCTGCCCCTGGTGTTCCTCACAGCCATACCAAGCCATATGTACGATCTAAGGGAAGCAAGTTTGATAAGCTTGTTAAGAAATTAGAGTTTTAA 339 0.4218 MKGKEGKIFMVVGTVTDDIRVHEVLVLKVTTLKFIETACVRIEMAGGECLTFDQLALRVPLGQNTVLLRGPKNSREAVKQFGPAPGVPHSHTKPYVRSKGSKFDKLVKKLEF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1851 112 SUPERFAMILY Ribosomal proteins L15p and L18e 4 69 IPR036227 -
Amo01g1851 112 PANTHER 60S RIBOSOMAL PROTEIN L18 1 106 IPR000039 GO:0003735|GO:0005840|GO:0006412
Amo01g1851 112 Gene3D - 1 111 - -
Amo01g1851 112 Pfam Ribosomal protein 60S L18 and 50S L18e 3 105 IPR021131 -
Amo01g1851 112 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1851 Amo-Chr1 48875849 48876539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1851 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 77.143 1.39e-58 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1851 K02883 - pop:7491291 179.874