Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1818 ATGGCTCCTGAGCATAACAACGACAACAGCACAAGCTACCAACCTTCGGAGCCAAGACCATGCGCTAACGGTTGCGGCTTCTTCGGCACCGCCGGCAACAGAGACCTCTGCTCCAAGTGCTTCAGAGATCTTTTTCTTGAAGAACAGCGTGCCGCTTCAGCCAAAGTCGTCGTTGAGAAAACCCTTCTCCATGGCTGCGTTGCTTCCGGGTCCTCTCCTTCTTCGGACACCACCGACTCCTCTGTCGTTCCTACGGCGGAGCCTCCTTCTTCCTCCGCTGCCGCAGCAGCGCCTTCCGGTCCCGTGAAGCCCTCGAACCGGTGCCGTGGTTGCAACAAGAAGGTTGGGCTGACGGGTTTCGTTTGCAAGTGTGGAGCGACGTTCTGCGGGGTTCACCGTTATCCAGAGAGACACGATTGTCCGTTTGATTTCAAGGGCGTTGGACGTGACGCGATTTCCAAGGCTAATCCTGTTGTGAAAGCAGATAAGCTCGATAAGTTTTAG 504 0.5556 MAPEHNNDNSTSYQPSEPRPCANGCGFFGTAGNRDLCSKCFRDLFLEEQRAASAKVVVEKTLLHGCVASGSSPSSDTTDSSVVPTAEPPSSSAAAAAPSGPVKPSNRCRGCNKKVGLTGFVCKCGATFCGVHRYPERHDCPFDFKGVGRDAISKANPVVKADKLDKF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1818 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Amo01g1818 167 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Amo01g1818 167 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Amo01g1818 167 MobiDBLite consensus disorder prediction 67 88 - -
Amo01g1818 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 167 - -
Amo01g1818 167 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 8 167 - -
Amo01g1818 167 Gene3D - 1 62 - -
Amo01g1818 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Amo01g1818 167 Gene3D - 75 163 IPR035896 -
Amo01g1818 167 MobiDBLite consensus disorder prediction 66 105 - -
Amo01g1818 167 Pfam A20-like zinc finger 19 42 IPR002653 GO:0003677|GO:0008270
Amo01g1818 167 SUPERFAMILY AN1-like Zinc finger 98 162 IPR035896 -
Amo01g1818 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 59 - -
Amo01g1818 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1818 Amo-Chr1 46945331 46946483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1818 1 167 C2H2 Transcription Factor Family AT3G52800 41.714 1.52e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1818 - - adu:107472707 301.982