Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1811 ATGAACACCTTCTCCCACGTACCTCCAGGCTTTCGTTTTCATCCGACTGATGAAGAATTAGTTGACTACTACCTTAGGAAAAAGGTAGCATCCAAAAAGATTGATCTAGATGTCATCAAAGACGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAAAATAGGAAGCGATGAAGAAAATGACTGGTATTTCTTCAGTCATAAAGATAAGAAGTACCCAACAGGAACAAGAACGAATAGGGCAACAAAAGCAGGGTTTTGGAAAGCCACGGGAAGAGATAAAGCAATATACTCAAAGCAGCATTGCCTTATTGGAATGAGAAAGACTCTTGTCTTCTACAAAGGAAGAGCTCCTAATGGCCACAAGTCTGATTGGATCATGCATGAGTATCGCCTTGAAACCAATGAAAATGGAACTGCTCCGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAGAAGAAAATGGCAACAGTGAGGAAAATTGGAGACTATGATTCACCATGTTCTTGGTACGATGAACAAGTTCCCTTCATGCAAGATCTTGAATCTTCATCCCCAATAAAGCCACCAATAATTAACAACAACCATTATGCTTCTTCATACAACCATCACCAGTTACAATTACCCTGCAAACCGGAATTCCATCAACCAATGCAATACAACAACATGAACATGCCACGTCACGACGACGCTGCTGATAATAACAACAACTTCCTCCAACTTCCTCAGCTTGAAAGCCCTAATGCTGGAATTAGCCCCTTCTTGCAACAACAAGATCCTCATCAGCTATTGCAACAACAAAATTCCAACAACAGCAATTATCATCTTGATCAAGTAACCGATTGGCGAGTTCTCGATAAATTCGTTGCGTCGCAGCTCATGAGTCATGGTGATGATGATGGCCACAACCACAATAATAATGTTTCCAAAGAAGTAATAAACAGTTATTCTGATGCTTCAATTCTCCATGTGGCTCAACAGATTGCTATGCTGGCAAATGGA 1014 0.4073 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQHCLIGMRKTLVFYKGRAPNGHKSDWIMHEYRLETNENGTAPEEGWVVCRVFKKKMATVRKIGDYDSPCSWYDEQVPFMQDLESSSPIKPPIINNNHYASSYNHHQLQLPCKPEFHQPMQYNNMNMPRHDDAADNNNNFLQLPQLESPNAGISPFLQQQDPHQLLQQQNSNNSNYHLDQVTDWRVLDKFVASQLMSHGDDDGHNHNNNVSKEVINSYSDASILHVAQQIAMLANG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1811 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 326 - -
Amo01g1811 338 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Amo01g1811 338 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Amo01g1811 338 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Amo01g1811 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 326 - -
Amo01g1811 338 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1811 Amo-Chr1 46611245 46613771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1811 1 319 NAC Transcription Factor Family AT1G62700 58.496 1.83e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g1811 NAM 2.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1811 - - aip:107606832 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1488 05 21600640 21603151 Amo01g1811 01 46611245 46613771 PCT
Amo01g1811 01 46611245 46613771 Amo05g1488 05 21600640 21603151 PCT