Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1810 ATGAACACCTTCTCCCACGTACCTCCAGGCTTTCGTTTTCATCCGACTGATGAAGAATTAGTTGACTACTACCTTAGGAAAAAGGTAGCATCCAAAAAGATTGATCTAGATGTCATCAAAGACGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAAAATAGGAAGCGATGAAGAAAATGACTGGTATTTCTTCAGTCATAAAGATAAGAAGTACCCAACAGGAACAAGAACGAATAGGGCAACAAAAGCAGGGTTTTGGAAAGCCACGGGAAGAGATAAAGCAATATACTCAAAGCAGCATTGCCTTATTGGAATGAGAAAGACTCTTGTCTTCTACAAAGGAAGAGCTCCTAATGGCCACAAAGTGTTCAAGAAGAAAATGGCAACAGTGAGGAAAATTGGAGACTATGATTCACCATGTTCTTGGTACGATGAACAAGTTCCCTTCATGCAAGATCTTGAATCCTCATCCCCAATAAAGCCACCAATAATTAACAACAACCATTATGCTTCTTCATACAACTACCACCAGTTACAATTACCCTGCAAACCGGAATTCCATCAACTTATGCAATACAACAACATGAACATGCCACGTCACGACGACGCTGCTGATAATAACAACAACTTCCTCCAACTTCCTCAGCTTGAAAGCCCTAATGGTGGAATTAGCCCCTTCTTGCAACAACAAGATCATCATCATCAGCTATTGCAACAACAAAATTCCAACAACAGCAATTATCATCTTGATCAAGTAACCGATTGGCGAGTTCTCGATAAATTCGTTGCGTCGCAGCTCATGAGTCATGGTCATGATGATAATGATGACGATGGCCACAACAATAATAATAATGTTTCCAAAGAA 879 0.3993 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQHCLIGMRKTLVFYKGRAPNGHKVFKKKMATVRKIGDYDSPCSWYDEQVPFMQDLESSSPIKPPIINNNHYASSYNYHQLQLPCKPEFHQLMQYNNMNMPRHDDAADNNNNFLQLPQLESPNGGISPFLQQQDHHHQLLQQQNSNNSNYHLDQVTDWRVLDKFVASQLMSHGHDDNDDDGHNNNNNVSKE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1810 293 MobiDBLite consensus disorder prediction 274 293 - -
Amo01g1810 293 Gene3D NAC domain 16 130 IPR036093 GO:0003677|GO:0006355
Amo01g1810 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 126 - -
Amo01g1810 293 SUPERFAMILY NAC domain 5 126 IPR036093 GO:0003677|GO:0006355
Amo01g1810 293 ProSiteProfiles NAC domain profile. 7 155 IPR003441 GO:0003677|GO:0006355
Amo01g1810 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 126 291 - -
Amo01g1810 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 126 - -
Amo01g1810 293 MobiDBLite consensus disorder prediction 206 232 - -
Amo01g1810 293 MobiDBLite consensus disorder prediction 273 293 - -
Amo01g1810 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 126 291 - -
Amo01g1810 293 Pfam No apical meristem (NAM) protein 8 126 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1810 Amo-Chr1 46600488 46602970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1810 1 271 NAC Transcription Factor Family AT1G62700 54.354 5.34e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g1810 NAM 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1810 - - aip:107606832 551.206