Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1809 ATGCGAGGCCTTCTTCTTCCATCGCCCAATCAATTCCATTTCGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATTCCGAATCCATCCCCAAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTAGGACTGTTGTTGATGAGCTTCCACGCCCACCTATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCCGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTYCTGATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA 471 0.4756 MRGLLLPSPNQFHFGHSFFSPTHNLLEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVRQQEGEEVLMKDAGFYASANVGVSPY* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1809 156 PANTHER PROTEIN YABBY 6-RELATED 1 154 IPR006780 GO:0007275
Amo01g1809 156 Pfam YABBY protein 50 119 IPR006780 GO:0007275
Amo01g1809 156 PANTHER PROTEIN YABBY 4 1 154 - -
Amo01g1809 156 SUPERFAMILY HMG-box 63 112 IPR036910 -
Amo01g1809 156 Gene3D High mobility group box domain 64 139 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1809 Amo-Chr1 46455270 46459173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1809 1 156 C2C2-YABBY Transcription Factor Family AT2G45190 57.831 2.58e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo01g1809 YABBY 6.1e-39 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1809 K25796 - gmx:100798441 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1809 01 46455270 46459173 Amo11g1396 11 50455770 50459861 hybridization