Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1790 CGACGTCTTGCAAACACCCTCCCTCCCCCCAACCAAAATCCCTCATCCCCCAAACTTTTCCCATTCCCTCGTAAGTTCCCCCCAAATTTCCCCAATCCTTCAGCTCAGAATTGGCCAAGCCTTCTTTCCTACCCAGCCACGCACCCTTCTCCTCTCTCTCGTCGTGCAAAACCCAGTTGTTGGTCACCAGCTTCGAAGCCCACTGTCCGTTGTCGTCTTGCTCCAACTCATGAAGTTGGGCATCAGCTCCGCTTTGCCCACCGTCCGTCATTAGCGTTTGTTGGGTCATCCTGGAGCTTGTCTCGAAGCCTTAAACCTGTCGCTGTTCGTGTCATCGTTGTGGAAGTCTCAAAGCTCTCCCCAACTCTGCAAATCGCCAGCTTCACGGGCCTGGTGTACAAAGCCCTCAAAGCTCTTCGTAATAAAACTAAAGAGCTTGCTATCTTCTGCGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTACAAAACTTTATGAATATGCAAACACAAGGATTATTTTTTTGGACTGGAAGACATGA 543 0.4954 RRLANTLPPPNQNPSSPKLFPFPRKFPPNFPNPSAQNWPSLLSYPATHPSPLSRRAKPSCWSPASKPTVRCRLAPTHEVGHQLRFAHRPSLAFVGSSWSLSRSLKPVAVRVIVVEVSKLSPTLQIASFTGLVYKALKALRNKTKELAIFCDAEVGLVIFSSTTKLYEYANTRIIFLDWKT* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1790 180 MobiDBLite consensus disorder prediction 10 32 - -
Amo01g1790 180 Gene3D - 134 175 IPR036879 GO:0003677|GO:0046983
Amo01g1790 180 ProSiteProfiles MADS-box domain profile. 134 172 IPR002100 GO:0003677|GO:0046983
Amo01g1790 180 MobiDBLite consensus disorder prediction 1 32 - -
Amo01g1790 180 PRINTS MADS domain signature 149 170 IPR002100 GO:0003677|GO:0046983
Amo01g1790 180 PRINTS MADS domain signature 134 149 IPR002100 GO:0003677|GO:0046983
Amo01g1790 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 137 168 IPR002100 GO:0003677|GO:0046983
Amo01g1790 180 SUPERFAMILY SRF-like 137 172 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1790 Amo-Chr1 45248934 45252002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1790 134 171 MADS-box Gene Family AT4G37940 65.789 2.05e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo01g1790 SRF-TF 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1790 K09264 - vvi:104878193 56.6102