Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1783 GACTGTCGCTGTTCTGACCATCGCTATTTTACAAATTCCTGTTACACATTACAAAAATGGACATCTTTTAGCTTTCTCTTTTGTTATCTTATTTTAGGAGCTTCGGAGATTGTTCCAGATTATCCAATTCTTTATGTTGACGACCTAGCAGATCAAATAGCCGAGGTTCTCTTTTTTGGTCTTAGTGCAGTAATGTGCATGGGAGTAGCTGTCGGGGCTTACATTCTTACCTTATTTGCTGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTATGTCCGTGCACCCGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTACCTATTGATGATACCATTGAAGGTGTAACTGGCAATCTATTTGATGCTTTCTTGAAACCTTACTTCTTGAAAGCTTATCGTCCTGTCAGAAAAAGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGAAGTTTAAGGTCATTGAAACTGATCCTAGGGAGTACTGTATGGTTGCTCCAGATACTGAAATCTTCTATGAGGGGGAGCCTTTAAAAAGAGAGGATGAAGAGAGGCAGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGCAAGAGCTGTTGCTAATGAAATGGGAGCTTTCCTATTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAACCAATCTGAGGAAAGCATTTGAAGTGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCAGGAAATTGATATTGGTGTTCCTGATGAAGTTGGTCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGTTCATTAA 1173 0.4169 DCRCSDHRYFTNSCYTLQKWTSFSFLFCYLILGASEIVPDYPILYVDDLADQIAEVLFFGLSAVMCMGVAVGAYILTLFAGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVMSVHPCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLKAYRPVRKRDLFLVRGGMRSVKFKVIETDPREYCMVAPDTEIFYEGEPLKREDEERQDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKARAVANEMGAFLFCINGPEIMSKLAGESETNLRKAFEVAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSHAHVIVIGATNRPNSIDQEIDIGVPDEVGRLEVLRIHTKNMKLSDDVVH* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1783 390 SUPERFAMILY ADC-like 45 125 IPR009010 -
Amo01g1783 390 PANTHER AAA-FAMILY ATPASE 78 388 - -
Amo01g1783 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 388 IPR027417 -
Amo01g1783 390 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 78 388 - -
Amo01g1783 390 Pfam Cell division protein 48 (CDC48), N-terminal domain 81 126 IPR003338 -
Amo01g1783 390 Gene3D - 128 222 - -
Amo01g1783 390 Gene3D - 367 383 - -
Amo01g1783 390 SMART CDC48_N_2 43 128 IPR003338 -
Amo01g1783 390 Gene3D - 223 366 IPR027417 -
Amo01g1783 390 CDD AAA 226 363 - -
Amo01g1783 390 Pfam Ndr family 33 99 IPR004142 -
Amo01g1783 390 Gene3D - 43 127 - -
Amo01g1783 390 SMART CDC48_2_2 145 211 IPR004201 -
Amo01g1783 390 Pfam Cell division protein 48 (CDC48), domain 2 147 208 IPR004201 -
Amo01g1783 390 Pfam ATPase family associated with various cellular activities (AAA) 259 361 IPR003959 GO:0005524|GO:0016887
Amo01g1783 390 SUPERFAMILY Cdc48 domain 2-like 127 219 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1783 Amo-Chr1 43864408 43869121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1783 219 388 Calmodulin-binding Proteins AT3G56690 39.594 1.66e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1783 K13525 - gmx:100783508 561.222